CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q6R2T1_CHICK
(
Gallus gallus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSGALG00000000618
T60379_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000000874
S1
4
78
LPELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEVVDVGDKVWVKLIGKEMKDDKLKLSLS
Links
Other
S1
family RBPs
Other
Gallus gallus
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZCCHC17
Meleagris gallopavo
ENSMGAG00000000777
N
0.948
Q3T0H4_BOVIN
Bos taurus
ENSBTAG00000016818
N
0.827
XM_535332.2
Canis familiaris
ENSCAFG00000011131
N
0.827
LOC616011
Bos taurus
ENSBTAG00000001432
N
0.827
ZCCHC17
Vicugna pacos
ENSVPAG00000003834
N
0.827
ZCCHC17
Tarsius syrichta
ENSTSYG00000000490
N
0.827
LOC100409512
Callithrix jacchus
ENSCJAG00000006259
N
0.827
Zcchc17
Dipodomys ordii
ENSDORG00000004128
N
0.827
ZCCHC17
Homo sapiens
ENSG00000121766
N
0.827
ZCCHC17
Felis catus
ENSFCAG00000004196
N
0.827
ZCCHC17
Echinops telfairi
ENSETEG00000007421
N
0.827
LOC100056288
Equus caballus
ENSECAG00000025040
N
0.827
Zcchc17
Rattus norvegicus
ENSRNOG00000012266
N
0.827
ZCCHC17
Tursiops truncatus
ENSTTRG00000014870
N
0.827
ZCCHC17
Macaca mulatta
ENSMMUG00000012156
N
0.827
Zcchc17
Mus musculus
ENSMUSG00000028772
N
0.827
ZCCHC17
Pteropus vampyrus
ENSPVAG00000014747
N
0.827
ZCCHC17
Myotis lucifugus
ENSMLUG00000000594
N
0.827
ENSOCUG00000014599
Oryctolagus cuniculus
ENSOCUG00000014599
N
0.827
ZCCHC17
Microcebus murinus
ENSMICG00000009354
N
0.827
ZCCHC17
Pan troglodytes
ENSPTRG00000000456
N
0.827
ENSPPYG00000001617
Pongo pygmaeus
ENSPPYG00000001617
N
0.827
XP_001381726.1
Monodelphis domestica
ENSMODG00000017082
N
0.813
ZCCHC17
Loxodonta africana
ENSLAFG00000015364
N
0.805
ENSCPOG00000000106
Cavia porcellus
ENSCPOG00000000106
N
0.800
ENSCAFG00000001857
Canis familiaris
ENSCAFG00000001857
N
0.800
ENSCPOG00000022394
Cavia porcellus
ENSCPOG00000022394
N
0.787
ZCCHC17
Erinaceus europaeus
ENSEEUG00000014855
N
0.760
zcchc17
Xenopus tropicalis
ENSXETG00000012917
N
0.753
ENSMODG00000025345
Monodelphis domestica
ENSMODG00000025345
N
0.747
ZCCHC17
Choloepus hoffmanni
ENSCHOG00000001581
N
0.733
ENSOCUG00000027238
Oryctolagus cuniculus
ENSOCUG00000027238
N
0.733
XM_001381689.1
Monodelphis domestica
ENSMODG00000020372
N
0.720