fgenesh1_pg.C_chr_1.1000254 (Pichia stipitis)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 fgenesh1_pg.C_chr_1.1000254 T61207_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_chr_1.1000254 S1 80 162

Links

Other S1 family RBPs
Other Pichia stipitis RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RPB7 Candida albicans orf19.3347 N 1.000
DEHA0G08195g Debaryomyces hansenii DEHA0G08195g N 1.000
Cd36_01440 Candida dubliniensis Cd36_01440 N 1.000
CLUG_03627 Candida lusitaniae CLUG_03627 N 0.976
PGUG_02831 Candida guilliermondii PGUG_02831 N 0.976
LELG_01428 Lodderomyces elongisporus LELG_01428 N 0.964
CPAG_00867 Candida parapsilosis CPAG_00867 N 0.964
CTRG_04454 Candida tropicalis CTRG_04454 N 0.916
YALI0D11627g Yarrowia lipolytica YALI0D11627g N 0.771
XP_002494355.1 Pichia pastoris XP_002494355.1 N 0.747
SJAG_01436 Schizosaccharomyces japonicus SJAG_01436 N 0.747
SPOG_03808 Schizosaccharomyces cryophilus SPOG_03808 N 0.735
SOCG_01722 Schizosaccharomyces octosporus SOCG_01722 N 0.723
PredSwiss_CON2711.1 Pneumocystis carinii PredSwiss_CON2711.1 N 0.723
rpb7 Schizosaccharomyces pombe SPACUNK4.06c N 0.711