cassava35664.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava35664.valid.m1 T62337_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35664.valid.m1 YTH 487 557

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006347 Ricinus communis 30169.m006347 N 0.817
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.758
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.758
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.758
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.758
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.758
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.758
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.758
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.758
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.758
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.758
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.758
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.758
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.758
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.758
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.758
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.758
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.758
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.758
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.758
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.750
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.736
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.736
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.736
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.736
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.736
mgf013935m Mimulus guttatus mgf013935m N 0.703