cassava18203.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava18203.valid.m1 T62314_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava18203.valid.m1 YTH 487 577

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava20494.m1 Manihot esculenta cassava20494.m1 N 1.000
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 1.000
cassava20495.m1 Manihot esculenta cassava20495.m1 N 1.000
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 1.000
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.956
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.956
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.956
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.956
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.956
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.956
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.956
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.956
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.956
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.956
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.956
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.956
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.956
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.956
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.956
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.945
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.945
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.945
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.945
MDP0000124048 Malus x domestica MDP0000124048 N 0.912
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.901
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.901
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.890
MDP0000718677 Malus x domestica MDP0000718677 N 0.890
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.890
PK23716.1 Cannabis sativa PK23716.1 N 0.890
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.890
MDP0000488588 Malus x domestica MDP0000488588 N 0.890
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.890
mgf013853m Mimulus guttatus mgf013853m N 0.879
mgf013935m Mimulus guttatus mgf013935m N 0.879
MDP0000129009 Malus x domestica MDP0000129009 N 0.879
mgf009938m Mimulus guttatus mgf009938m N 0.879
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.868
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.868
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.868
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.857
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.857
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.857
SB01G008170 Sorghum bicolor Sb01g008170 N 0.857
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.857
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.846
SB02G003990 Sorghum bicolor Sb02g003990 N 0.846
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.835
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.835
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.835
SB01G005500 Sorghum bicolor Sb01g005500 N 0.824
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.824
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.813
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.813
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.813
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.802
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.802
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
29950.m001140 Ricinus communis 29950.m001140 N 0.791
30169.m006347 Ricinus communis 30169.m006347 N 0.791
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.780
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.780
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.780
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.780
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.758
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.758
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.747
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.747
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
ppa003664m Prunus persica ppa003664m N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.736
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
cassava35664.valid.m1 Manihot esculenta cassava35664.valid.m1 N 0.736
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.703
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.703
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.703
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
ppa002483m Prunus persica ppa002483m N 0.703
PK05579.1 Cannabis sativa PK05579.1 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703