B9GLB9_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0001s03940 T62240_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s03940.1 YTH 475 554

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006347 Ricinus communis 30169.m006347 N 0.829
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.813
MDP0000124048 Malus x domestica MDP0000124048 N 0.758
cassava35664.valid.m1 Manihot esculenta cassava35664.valid.m1 N 0.750
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.747
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.747
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.747
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.747
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.747
SB02G003990 Sorghum bicolor Sb02g003990 N 0.747
MDP0000718677 Malus x domestica MDP0000718677 N 0.747
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.736
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.736
PK23716.1 Cannabis sativa PK23716.1 N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.736
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.736
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.736
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.736
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.736
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.736
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.736
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.736
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.736
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.736
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.736
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.736
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.736
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.736
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.736
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.736
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.736
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.725
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.725
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.723
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
GRMZM2G363789 Zea mays GRMZM2G363789 N 0.707
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
29950.m001140 Ricinus communis 29950.m001140 N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.703