cassava30727.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava30727.valid.m1 T62327_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30727.valid.m1 YTH 486 576

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

155 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 1.000
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 1.000
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.978
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.978
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.978
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.978
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.978
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.978
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.978
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.978
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.978
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.978
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.978
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.978
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.967
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.967
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.967
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.967
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.956
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.956
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.956
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.956
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.956
MDP0000124048 Malus x domestica MDP0000124048 N 0.901
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.890
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.890
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.890
mgf013935m Mimulus guttatus mgf013935m N 0.890
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.890
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.879
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.879
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.879
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.879
PK23716.1 Cannabis sativa PK23716.1 N 0.879
MDP0000718677 Malus x domestica MDP0000718677 N 0.879
MDP0000129009 Malus x domestica MDP0000129009 N 0.879
MDP0000488588 Malus x domestica MDP0000488588 N 0.879
mgf009938m Mimulus guttatus mgf009938m N 0.879
mgf013853m Mimulus guttatus mgf013853m N 0.879
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.868
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.857
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.857
SB01G008170 Sorghum bicolor Sb01g008170 N 0.857
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.857
SB01G005500 Sorghum bicolor Sb01g005500 N 0.846
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.846
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.846
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.846
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.835
SB02G003990 Sorghum bicolor Sb02g003990 N 0.835
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.835
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.824
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.824
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.813
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.813
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.813
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.813
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
30169.m006347 Ricinus communis 30169.m006347 N 0.802
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.791
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.791
29950.m001140 Ricinus communis 29950.m001140 N 0.780
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.780
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.780
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.769
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.769
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.769
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.769
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
cassava35664.valid.m1 Manihot esculenta cassava35664.valid.m1 N 0.758
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.747
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.736
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.736
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.725
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
MDP0000248088 Malus x domestica MDP0000248088 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
SB07G000670 Sorghum bicolor Sb07g000670 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.703
ppa003664m Prunus persica ppa003664m N 0.703
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.703
MDP0000552419 Malus x domestica MDP0000552419 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.703