CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_001380899.1
(
Monodelphis domestica
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSMODG00000017202
T00562_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000021460
CCCH ZF
172
198
KDQANCPFYIKTGSCRFGDRCSRKHNY
ENSMODP00000021460
RRM
245
303
YEDVLPEFKNVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQAAFSLFNGRWYAGRQLQ
ENSMODP00000021460
CCCH ZF
312
337
WKMAICGLFGRQKCPRGKHCNFLHVF
ENSMODP00000037913
CCCH ZF
159
185
KDQANCPFYIKTGSCRFGDRCSRKHNY
ENSMODP00000037913
RRM
232
290
YEDVLPEFKNVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQAAFSLFNGRWYAGRQLQ
ENSMODP00000037913
CCCH ZF
299
324
WKMAICGLFGRQKCPRGKHCNFLHVF
ENSMODP00000037914
CCCH ZF
164
190
KDQANCPFYIKTGSCRFGDRCSRKHNY
ENSMODP00000037914
RRM
237
295
YEDVLPEFKNVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQAAFSLFNGRWYAGRQLQ
ENSMODP00000037914
CCCH ZF
304
329
WKMAICGLFGRQKCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Monodelphis domestica
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g24860
Oryza sativa
LOC_Os01g24860
N
0.000
LOC_Os01g51340
Oryza sativa
LOC_Os01g51340
N
0.000
LOC_Os02g24520
Oryza sativa
LOC_Os02g24520
N
0.000
LOC_Os02g25170
Oryza sativa
LOC_Os02g25170
N
0.000
LOC_Os02g36470
Oryza sativa
LOC_Os02g36470
N
0.000
LOC_Os03g15140
Oryza sativa
LOC_Os03g15140
N
0.000
LOC_Os03g16530
Oryza sativa
LOC_Os03g16530
N
0.000
LOC_Os03g29520
Oryza sativa
LOC_Os03g29520
N
0.000
LOC_Os03g31530
Oryza sativa
LOC_Os03g31530
N
0.000
LOC_Os03g33828
Oryza sativa
LOC_Os03g33828
N
0.000
LOC_Os03g37210
Oryza sativa
LOC_Os03g37210
N
0.000
LOC_Os04g30440
Oryza sativa
LOC_Os04g30440
N
0.000
LOC_Os04g48590
Oryza sativa
LOC_Os04g48590
N
0.000
LOC_Os05g19460
Oryza sativa
LOC_Os05g19460
N
0.000
LOC_Os05g20450
Oryza sativa
LOC_Os05g20450
N
0.000
LOC_Os05g24100
Oryza sativa
LOC_Os05g24100
N
0.000
LOC_Os05g24310
Oryza sativa
LOC_Os05g24310
N
0.000
LOC_Os06g17350
Oryza sativa
LOC_Os06g17350
N
0.000
LOC_Os06g22750
Oryza sativa
LOC_Os06g22750
N
0.000
LOC_Os06g25560
Oryza sativa
LOC_Os06g25560
N
0.000
LOC_Os06g25710
Oryza sativa
LOC_Os06g25710
N
0.000
LOC_Os06g25850
Oryza sativa
LOC_Os06g25850
N
0.000
LOC_Os06g28490
Oryza sativa
LOC_Os06g28490
N
0.000
LOC_Os06g32470
Oryza sativa
LOC_Os06g32470
N
0.000
LOC_Os07g15470
Oryza sativa
LOC_Os07g15470
N
0.000
LOC_Os07g28370
Oryza sativa
LOC_Os07g28370
N
0.000
LOC_Os07g33150
Oryza sativa
LOC_Os07g33150
N
0.000
LOC_Os07g37900
Oryza sativa
LOC_Os07g37900
N
0.000
LOC_Os08g14290
Oryza sativa
LOC_Os08g14290
N
0.000
LOC_Os08g19540
Oryza sativa
LOC_Os08g19540
N
0.000
LOC_Os08g31150
Oryza sativa
LOC_Os08g31150
N
0.000
LOC_Os09g02960
Oryza sativa
LOC_Os09g02960
N
0.000
LOC_Os09g04240
Oryza sativa
LOC_Os09g04240
N
0.000
LOC_Os09g07400
Oryza sativa
LOC_Os09g07400
N
0.000
LOC_Os09g14470
Oryza sativa
LOC_Os09g14470
N
0.000
LOC_Os10g21510
Oryza sativa
LOC_Os10g21510
N
0.000
LOC_Os11g02880
Oryza sativa
LOC_Os11g02880
N
0.000
LOC_Os11g09919
Oryza sativa
LOC_Os11g09919
N
0.000
LOC_Os11g19610
Oryza sativa
LOC_Os11g19610
N
0.000
LOC_Os11g20610
Oryza sativa
LOC_Os11g20610
N
0.000
LOC_Os12g13330
Oryza sativa
LOC_Os12g13330
N
0.000
LOC_Os12g24610
Oryza sativa
LOC_Os12g24610
N
0.000
LOC_Os12g26310
Oryza sativa
LOC_Os12g26310
N
0.000