ENSCING00000006888 (Ciona intestinalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSCING00000006888 T02335_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000014158 CCCH ZF 99 124

Links

Other CCCH ZF family RBPs
Other Ciona intestinalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001499 Ricinus communis 29805.m001499 N 0.731
72073 Helobdella robusta 72073 N 0.846
AAH77826 Xenopus laevis AAH77826 N 0.846
AB07703.1 Alternaria brassicicola AB07703.1 N 0.731
ACL082W Ashbya gossypii ACL082W N 0.769
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.846
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.846
Aqu1.222312 Amphimedon queenslandica Aqu1.222312 N 0.808
ARB_01723 Arthroderma benhamiae ARB_01723 N 0.731
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.731
BAD89267 Xenopus laevis BAD89267 N 0.846
BDBG_01641 Blastomyces dermatitidis BDBG_01641 N 0.731
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.885
Bm1_13920 Brugia malayi Bm1_13920 N 0.769
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.731
ACLA_016930 Aspergillus clavatus CADACLAG00000891 N 0.731
AFUA_5G13930 Aspergillus fumigatus CADAFUAG00006431 N 0.731
ANIA_06922 Aspergillus nidulans CADANIAG00007728 N 0.731
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.769
NFIA_073040 Neosartorya fischeri CADNFIAG00007899 N 0.731
CBG00292 Caenorhabditis briggsae CBG00292 N 0.808
CBN03898 Caenorhabditis brenneri CBN03898 N 0.808
CBN11546 Caenorhabditis brenneri CBN11546 N 0.808
CC1G_07829 Coprinopsis cinerea CC1G_07829 N 0.731
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.731
CJA17052 Caenorhabditis japonica CJA17052 N 0.808
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.769
CRE20408 Caenorhabditis remanei CRE20408 N 0.808
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.731
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.846
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.808
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.846
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.846
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.846
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.846
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.846
zc3h15 Danio rerio ENSDARG00000015889 N 0.885
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.808
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.846
LOC100068634 Equus caballus ENSECAG00000017149 N 0.846
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.769
ZC3H15 Felis catus ENSFCAG00000008213 N 0.846
ZC3H15 Homo sapiens ENSG00000065548 N 0.846
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.885
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.846
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.846
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.846
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.846
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.846
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.846
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.846
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.846
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.846
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.846
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.846
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.808
ZC3H15 Oryctolagus cuniculus ENSOCUG00000027731 N 0.731
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.846
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.846
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.885
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.846
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.846
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.846
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.846
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.846
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.808
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.846
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.846
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.846
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.846
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.846
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.846
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.885
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.846
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.846
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.846
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.808
estExt_fgenesh1_pm.C_180201 Phytophthora capsici estExt_fgenesh1_pm.C_180201 N 0.808
estExt_Genewise1.C_60471 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60471 N 0.731
estExt_Genewise1Plus.C_31385 Mycosphaerella fijiensis estExt_Genewise1Plus.C_31385 N 0.731
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.808
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.885
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.846
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.769
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.769
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.808
GD10149 Drosophila simulans FBgn0181924 N 0.846
GK21573 Drosophila willistoni FBgn0223565 N 0.846
fgenesh1_pg.C_scaffold_3139000003 Phytophthora capsici fgenesh1_pg.C_scaffold_3139000003 N 0.808
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.731
fgeneshTA2_pg.C_scaffold_15000146 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_15000146 N 0.769
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.731
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.731
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.731
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.731
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.769
HCAG_08348 Histoplasma capsulatum HCAG_08348 N 0.731
KLLA0C13673g Kluyveromyces lactis KLLA0C13673g N 0.731
KLTH0G08162g Kluyveromyces thermotolerans KLTH0G08162g N 0.731
Kwal_2969 Kluyveromyces waltii Kwal_2969 N 0.769
LOAG_00784 Loa loa LOAG_00784 N 0.769
MCYG_02954 Microsporum canis MCYG_02954 N 0.731
MDP0000161236 Malus x domestica MDP0000161236 N 0.731
MGG_07010 Magnaporthe oryzae MGG_07010 N 0.731
MGYG_00125 Microsporum gypseum MGYG_00125 N 0.731
Minc08580 Meloidogyne incognita Minc08580 N 0.808
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.846
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.885
Pa_3_8730 Podospora anserina Pa_3_8730 N 0.731
Pc21g03130 Penicillium chrysogenum Pc21g03130 N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.731
PHUM521160 Pediculus humanus PHUM521160 N 0.808
PITG_04608 Phytophthora infestans PITG_04608 N 0.846
PK12342.1 Cannabis sativa PK12342.1 N 0.731
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.731
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.731
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.731
ppa007639m Prunus persica ppa007639m N 0.731
Q6DD06 Xenopus laevis Q6DD06 N 0.846
SAKL0E09966g Lachancea kluyveri SAKL0E09966g N 0.769
SPPG_00188 Spizellomyces punctatus SPPG_00188 N 0.731
s_451242 Phytophthora sojae s_451242 N 0.846
TEQG_08385 Trichophyton equinum TEQG_08385 N 0.731
TERG_01412 Trichophyton rubrum TERG_01412 N 0.731
TESG_03135 Trichophyton tonsurans TESG_03135 N 0.731
TRV_03417 Trichophyton verrucosum TRV_03417 N 0.731
WUBG_13399 Wuchereria bancrofti WUBG_13399 N 0.769
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.731