RGD1565247 (Rattus norvegicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSRNOG00000017598 T03323_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000023642 CCCH ZF 80 103
ENSRNOP00000023642 CCCH ZF 286 312
ENSRNOP00000062101 CCCH ZF 222 239
ENSRNOP00000062101 CCCH ZF 484 510

Links

Other CCCH ZF family RBPs
Other Rattus norvegicus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
188708 Helobdella robusta 188708 N 0.745
AAEL012456 Aedes aegypti AAEL012456 N 0.765
AAH46725 Xenopus laevis AAH46725 N 0.824
AGAP000684 Anopheles gambiae AGAP000684 N 0.784
amel4_ncbi_hmm89035 Apis mellifera amel4_ncbi_hmm89035 N 0.778
Ame_R007986 Ailuropoda melanoleuca Ame_R007986 N 0.863
UNK Anolis carolinensis ENSACAG00000007303 N 0.804
UNKL Bos taurus ENSBTAG00000014126 N 0.885
A1A4K6_BOVIN Bos taurus ENSBTAG00000016287 N 0.843
UNK_CANFA Canis familiaris ENSCAFG00000004925 N 0.843
UNKL Callithrix jacchus ENSCJAG00000013151 N 0.904
LOC100390502 Callithrix jacchus ENSCJAG00000014056 N 0.843
UNKL Cavia porcellus ENSCPOG00000011846 N 0.980
UNK Cavia porcellus ENSCPOG00000012679 N 0.843
unk Danio rerio ENSDARG00000000935 N 0.784
UNKL Danio rerio ENSDARG00000037838 N 0.902
Unk Dipodomys ordii ENSDORG00000008133 N 0.843
LOC100067623 Equus caballus ENSECAG00000010641 N 0.904
UNK Equus caballus ENSECAG00000024672 N 0.843
UNK Echinops telfairi ENSETEG00000019640 N 0.844
UNK Felis catus ENSFCAG00000005757 N 0.843
UNKL Homo sapiens ENSG00000059145 N 0.978
UNK Homo sapiens ENSG00000132478 N 0.843
UNK Gasterosteus aculeatus ENSGACG00000005102 N 0.827
UNK Gallus gallus ENSGALG00000002278 N 0.804
UNKL Gallus gallus ENSGALG00000006450 N 0.902
UNK Gorilla gorilla ENSGGOG00000009203 N 0.843
UNKL Gorilla gorilla ENSGGOG00000014915 N 0.978
UNKL Loxodonta africana ENSLAFG00000018262 N 0.941
UNK Loxodonta africana ENSLAFG00000022662 N 0.843
UNK Macropus eugenii ENSMEUG00000004094 N 0.824
UNK Meleagris gallopavo ENSMGAG00000004713 N 0.804
UNKL Meleagris gallopavo ENSMGAG00000006920 N 0.902
UNK Myotis lucifugus ENSMLUG00000015453 N 0.843
UNK Macaca mulatta ENSMMUG00000013646 N 0.843
UNK Monodelphis domestica ENSMODG00000007684 N 0.824
UNKL Monodelphis domestica ENSMODG00000016188 N 0.922
Unkl Mus musculus ENSMUSG00000015127 N 0.961
Unk Mus musculus ENSMUSG00000020770 N 0.863
UNK Oryctolagus cuniculus ENSOCUG00000014994 N 0.843
UNK Ochotona princeps ENSOPRG00000012784 N 0.765
UNKL Oryzias latipes ENSORLG00000005070 N 0.902
UNK Procavia capensis ENSPCAG00000004504 N 0.843
ENSPPYG00000006950 Pongo pygmaeus ENSPPYG00000006950 N 0.942
ENSPPYG00000008637 Pongo pygmaeus ENSPPYG00000008637 N 0.843
XR_022366.1 Pan troglodytes ENSPTRG00000007591 N 0.978
UNK Pan troglodytes ENSPTRG00000009656 N 0.843
UNK Pteropus vampyrus ENSPVAG00000008460 N 0.843
D4A564_RAT Rattus norvegicus ENSRNOG00000006600 N 0.863
UNK Sus scrofa ENSSSCG00000017201 N 0.843
UNK Spermophilus tridecemlineatus ENSSTOG00000013344 N 0.843
UNK Taeniopygia guttata ENSTGUG00000008279 N 0.804
UNKL Tetraodon nigroviridis ENSTNIG00000018588 N 0.863
UNK Takifugu rubripes ENSTRUG00000007192 N 0.843
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.933
UNKL Tursiops truncatus ENSTTRG00000011985 N 0.933
UNK Tursiops truncatus ENSTTRG00000015890 N 0.824
unk Xenopus tropicalis ENSXETG00000012578 N 0.804
estExt_Genewise1.C_sca_750115 Lottia gigantea estExt_Genewise1.C_sca_750115 N 0.804
e_gw.394.2.1 Branchiostoma floridae e_gw.394.2.1 N 0.784
PHUM219250 Pediculus humanus PHUM219250 N 0.804
SNAPOd2T00019464001 Oikopleura dioica SNAPOd2T00019464001 N 0.804