e_gw.394.2.1 (Branchiostoma floridae)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 e_gw.394.2.1 T04950_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.394.2.1 CCCH ZF 79 101
e_gw.394.2.1 CCCH ZF 278 304

Links

Other CCCH ZF family RBPs
Other Branchiostoma floridae RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
188708 Helobdella robusta 188708 N 0.720
AAEL012456 Aedes aegypti AAEL012456 N 0.780
AAH46725 Xenopus laevis AAH46725 N 0.800
AGAP000684 Anopheles gambiae AGAP000684 N 0.765
Ame_R007986 Ailuropoda melanoleuca Ame_R007986 N 0.760
UNK Anolis carolinensis ENSACAG00000007303 N 0.800
UNKL Bos taurus ENSBTAG00000014126 N 0.769
A1A4K6_BOVIN Bos taurus ENSBTAG00000016287 N 0.780
UNK_CANFA Canis familiaris ENSCAFG00000004925 N 0.780
UNKL Callithrix jacchus ENSCJAG00000013151 N 0.750
LOC100390502 Callithrix jacchus ENSCJAG00000014056 N 0.780
UNKL Cavia porcellus ENSCPOG00000011846 N 0.804
UNK Cavia porcellus ENSCPOG00000012679 N 0.780
unk Danio rerio ENSDARG00000000935 N 0.720
UNKL Danio rerio ENSDARG00000037838 N 0.843
Unk Dipodomys ordii ENSDORG00000008133 N 0.780
LOC100067623 Equus caballus ENSECAG00000010641 N 0.808
UNK Equus caballus ENSECAG00000024672 N 0.780
UNK Felis catus ENSFCAG00000005757 N 0.765
UNKL Homo sapiens ENSG00000059145 N 0.769
UNK Homo sapiens ENSG00000132478 N 0.780
UNK Gasterosteus aculeatus ENSGACG00000005102 N 0.750
UNK Gallus gallus ENSGALG00000002278 N 0.800
UNKL Gallus gallus ENSGALG00000006450 N 0.824
UNK Gorilla gorilla ENSGGOG00000009203 N 0.780
UNKL Gorilla gorilla ENSGGOG00000014915 N 0.769
UNKL Loxodonta africana ENSLAFG00000018262 N 0.804
UNK Loxodonta africana ENSLAFG00000022662 N 0.780
UNK Macropus eugenii ENSMEUG00000004094 N 0.780
UNK Meleagris gallopavo ENSMGAG00000004713 N 0.800
UNKL Meleagris gallopavo ENSMGAG00000006920 N 0.824
UNK Myotis lucifugus ENSMLUG00000015453 N 0.780
UNK Macaca mulatta ENSMMUG00000013646 N 0.780
UNK Monodelphis domestica ENSMODG00000007684 N 0.780
UNKL Monodelphis domestica ENSMODG00000016188 N 0.824
Unkl Mus musculus ENSMUSG00000015127 N 0.800
Unk Mus musculus ENSMUSG00000020770 N 0.760
UNK Oryctolagus cuniculus ENSOCUG00000014994 N 0.780
UNK Ochotona princeps ENSOPRG00000012784 N 0.700
UNKL Oryzias latipes ENSORLG00000005070 N 0.843
UNK Procavia capensis ENSPCAG00000004504 N 0.780
ENSPPYG00000006950 Pongo pygmaeus ENSPPYG00000006950 N 0.750
ENSPPYG00000008637 Pongo pygmaeus ENSPPYG00000008637 N 0.780
UNK Pan troglodytes ENSPTRG00000009656 N 0.780
UNK Pteropus vampyrus ENSPVAG00000008460 N 0.780
D4A564_RAT Rattus norvegicus ENSRNOG00000006600 N 0.760
RGD1565247 Rattus norvegicus ENSRNOG00000017598 N 0.784
UNK Sus scrofa ENSSSCG00000017201 N 0.780
UNK Spermophilus tridecemlineatus ENSSTOG00000013344 N 0.780
UNK Taeniopygia guttata ENSTGUG00000008279 N 0.800
UNKL Tetraodon nigroviridis ENSTNIG00000018588 N 0.765
UNK Takifugu rubripes ENSTRUG00000007192 N 0.760
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.784
UNK Tursiops truncatus ENSTTRG00000015890 N 0.760
unk Xenopus tropicalis ENSXETG00000012578 N 0.780
estExt_Genewise1.C_sca_750115 Lottia gigantea estExt_Genewise1.C_sca_750115 N 0.840
ISCW001613 Ixodes scapularis ISCW001613 N 0.740
PHUM219250 Pediculus humanus PHUM219250 N 0.760
SNAPOd2T00019464001 Oikopleura dioica SNAPOd2T00019464001 N 0.780