gw1.598.14.1 (Capitella teleta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 gw1.598.14.1 T17325_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.736
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.598.14.1 CSD 28 99

Links

Other CSD family RBPs
Other Capitella teleta RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49715 Xenopus laevis AAA49715 I 0.712
AAEL001375 Aedes aegypti AAEL001375 I 0.708
AAH41191 Xenopus laevis AAH41191 I 0.712
AAH42217 Xenopus laevis AAH42217 I 0.712
AAI06324 Xenopus laevis AAI06324 I 0.712
AAI30161 Xenopus laevis AAI30161 I 0.712
AGAP006108 Anopheles gambiae AGAP006108 I 0.708
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.708
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.708
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.708
CAA42778 Xenopus laevis CAA42778 I 0.712
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.712
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.712
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.712
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.712
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.712
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.712
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.726
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.712
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.712
CSDA Cavia porcellus ENSCPOG00000011329 I 0.712
ybx1 Danio rerio ENSDARG00000004757 I 0.712
Csda Dipodomys ordii ENSDORG00000009103 I 0.712
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.712
LOC100065107 Equus caballus ENSECAG00000013777 I 0.712
LOC100067336 Equus caballus ENSECAG00000023592 I 0.712
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.712
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.712
CSDA Echinops telfairi ENSETEG00000002557 I 0.712
CSDA Homo sapiens ENSG00000060138 I 0.712
YB-1 Homo sapiens ENSG00000065978 D 0.712
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.712
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.712
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.712
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.712
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.712
CSDA Loxodonta africana ENSLAFG00000017247 I 0.712
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.712
YBX1 Microcebus murinus ENSMICG00000014984 I 0.712
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.712
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.712
CSDA Macaca mulatta ENSMMUG00000022469 I 0.712
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.712
CSDA Monodelphis domestica ENSMODG00000018248 I 0.712
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.726
Ybx1 Mus musculus ENSMUSG00000028639 I 0.712
Csda Mus musculus ENSMUSG00000030189 I 0.712
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.712
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.712
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.712
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.712
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.712
CSDA Pan troglodytes ENSPTRG00000004681 I 0.712
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.712
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.712
Csda Rattus norvegicus ENSRNOG00000005480 I 0.712
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.712
CSDA Sus scrofa ENSSSCG00000000633 I 0.712
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.712
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.712
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.712
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.712
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.712
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.712
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.712
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.712
csda Xenopus tropicalis ENSXETG00000016239 I 0.712
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.806
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.726
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.889
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.819
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.875
fgenesh1_pg.C_scaffold_1662000001 Capitella teleta fgenesh1_pg.C_scaffold_1662000001 N 0.750
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.861
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.903
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.903
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.847
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.889
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.917
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.750
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.736
gw1.863.5.1 Capitella teleta gw1.863.5.1 I 0.750
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.903
P21573 Xenopus laevis P21573 I 0.712
PHUM156710 Pediculus humanus PHUM156710 I 0.750
PHUM156720 Pediculus humanus PHUM156720 I 0.708
Q00436 Xenopus laevis Q00436 I 0.712
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.736
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.722
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.722