CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Bicc1
(
Mus musculus
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSMUSG00000014329
T22500_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000014473
KH
72
124
GRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSMUSP00000014473
KH
136
201
TLKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARARI
ENSMUSP00000014473
KH
229
270
SIQHISQTYSVSVSFKQRSRMYGATVTVRGSQNNTNAVKEGT
ENSMUSP00000014473
KH
288
350
STQLDIAAQHHLFMMGRNGSNVKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSMUSP00000014473
SAM
877
935
GSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISVC
ENSMUSP00000101074
KH
1
42
MEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSMUSP00000101074
KH
54
119
TLKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARARI
ENSMUSP00000101074
KH
147
188
SIQHISQTYSVSVSFKQRSRMYGATVTVRGSQNNTNAVKEGT
ENSMUSP00000101074
KH
206
268
STQLDIAAQHHLFMMGRNGSNVKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSMUSP00000101074
SAM
795
853
GSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISVC
ENSMUSP00000119137
KH
1
42
MEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSMUSP00000119137
KH
54
119
TLKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARARI
ENSMUSP00000119137
KH
147
188
SIQHISQTYSVSVSFKQRSRMYGATVTVRGSQNNTNAVKEGT
ENSMUSP00000119137
KH
206
268
STQLDIAAQHHLFMMGRNGSNVKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSMUSP00000119137
SAM
795
853
GSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISVC
ENSMUSP00000123201
KH
72
124
GRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSMUSP00000123201
KH
136
201
TLKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARARI
ENSMUSP00000123201
KH
229
270
SIQHISQTYSVSVSFKQRSRMYGATVTVRGSQNNTNAVKEGT
ENSMUSP00000123201
KH
288
350
STQLDIAAQHHLFMMGRNGSNVKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSMUSP00000123201
SAM
877
936
GSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELS
Links
Other
KH,SAM
family RBPs
Other
Mus musculus
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPEB3
Myotis lucifugus
ENSMLUG00000009474
I
0.000
CPEB3
Otolemur garnettii
ENSOGAG00000002002
I
0.000
CPEB3
Procavia capensis
ENSPCAG00000012417
I
0.000
CPEB4
Tetraodon nigroviridis
ENSTNIG00000018221
I
0.000
CPEB3
Tarsius syrichta
ENSTSYG00000003928
I
0.000
CPEB3
Vicugna pacos
ENSVPAG00000002144
I
0.000
CPEB4
Vicugna pacos
ENSVPAG00000010897
I
0.000
cpeb2
Xenopus tropicalis
ENSXETG00000020324
I
0.000
Sjc_0029950
Schistosoma japonicum
Sjc_0029950
I
0.000