cpeb2 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000020324 T42927_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.880
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.848
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000026618 RRM 280 346
ENSXETP00000026618 RRM 388 441
ENSXETP00000026619 RRM 270 336
ENSXETP00000026619 RRM 378 442
ENSXETP00000026620 RRM 268 334
ENSXETP00000026620 RRM 376 440
ENSXETP00000043840 RRM 272 338
ENSXETP00000043840 RRM 380 444
ENSXETP00000043841 RRM 226 292
ENSXETP00000043841 RRM 334 398

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB2 Equus caballus ENSECAG00000008722 I 0.932
CPEB2 Homo sapiens ENSG00000137449 D 0.932
CPEB2 Gallus gallus ENSGALG00000014516 I 0.932
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.932
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.932
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.932
CPEB2 Bos taurus ENSBTAG00000019847 I 0.932
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.932
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.932
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.932
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.932
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.932
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.932
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.932
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.932
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.932
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.932
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.932
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.932
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.932
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.932
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.932
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.932
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.932
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.924
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.924
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.921
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.913
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.909
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.909
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.902
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.902
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.898
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.895
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.895
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.894
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.891
CPEB3 Homo sapiens ENSG00000107864 I 0.891
CPEB3 Gallus gallus ENSGALG00000006912 I 0.891
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.891
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.891
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.891
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.891
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.891
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.891
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.891
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.891
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.891
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.891
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.891
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.891
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.891
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.891
CPEB3 Bos taurus ENSBTAG00000015450 I 0.891
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.891
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.891
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.891
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.891
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.885
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.884
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.884
CPEB3 Sorex araneus ENSSARG00000001994 I 0.884
CPEB3 Equus caballus ENSECAG00000000077 I 0.884
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.883
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.883
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.883
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.883
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.883
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.883
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.883
ADH10187 Xenopus laevis ADH10187 I 0.883
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.883
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.883
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.883
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.883
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.883
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.883
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.883
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.883
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.883
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.883
CPEB4 Homo sapiens ENSG00000113742 D 0.883
LOC100058918 Equus caballus ENSECAG00000016921 I 0.883
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.883
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.883
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.883
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.883
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.883
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.883
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.883
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.883
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.880
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.880
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.879
GF10140 Drosophila ananassae FBgn0087181 I 0.879
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.879
cpeb3 Danio rerio ENSDARG00000060103 I 0.877
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.877
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.876
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.876
CPEB4 Sorex araneus ENSSARG00000013389 I 0.876
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.876
CPEB4 Danio rerio ENSDARG00000060495 I 0.876
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.876
ISCW010113 Ixodes scapularis ISCW010113 I 0.872
GG15051 Drosophila erecta FBgn0107305 I 0.871
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.871
GI12400 Drosophila mojavensis FBgn0135157 I 0.871
GH16131 Drosophila grimshawi FBgn0123602 I 0.871
orb2 Drosophila melanogaster FBgn0262573 D 0.871
GK17460 Drosophila willistoni FBgn0219459 I 0.871
GE21274 Drosophila yakuba FBgn0238542 I 0.871
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.871
GJ12289 Drosophila virilis FBgn0199538 I 0.871
GL20808 Drosophila persimilis FBgn0158403 I 0.871
CPEB4 Gallus gallus ENSGALG00000014074 I 0.871
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.871
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.871
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.870
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.870
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.869
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.869
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.869
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.869
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.869
PHUM335520 Pediculus humanus PHUM335520 I 0.856
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.850
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.848
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.841
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.833
CPEB2 Sorex araneus ENSSARG00000010559 I 0.833
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.833
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.833
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.801
CPEB2 Danio rerio ENSDARG00000052604 I 0.797
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.794
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.784
AGAP002296 Anopheles gambiae AGAP002296 I 0.776
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.775
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.763
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.761
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.739
CPEB2 Dasypus novemcinctus ENSDNOG00000016610 N 0.736
111676 Helobdella robusta 111676 I 0.719
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.707