CPEB4 (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000010897 T42800_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.884
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.833
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.810
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000010144 RRM 473 538
ENSVPAP00000010144 RRM 555 612

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.936
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.913
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.898
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.898
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.898
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.898
ADH10187 Xenopus laevis ADH10187 I 0.898
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.898
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.898
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.898
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.898
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.898
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.898
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.898
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.898
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.898
CPEB4 Homo sapiens ENSG00000113742 D 0.898
LOC100058918 Equus caballus ENSECAG00000016921 I 0.898
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.898
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.898
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.898
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.898
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.898
CPEB4 Sorex araneus ENSSARG00000013389 I 0.898
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.898
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.898
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.898
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.898
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.898
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.891
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.891
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.885
CPEB4 Gallus gallus ENSGALG00000014074 I 0.885
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.885
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.883
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.883
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.883
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.883
CPEB4 Danio rerio ENSDARG00000060495 I 0.883
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.883
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.876
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.876
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.861
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.861
CPEB3 Homo sapiens ENSG00000107864 I 0.861
CPEB3 Bos taurus ENSBTAG00000015450 I 0.861
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.861
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.861
CPEB3 Gallus gallus ENSGALG00000006912 I 0.861
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.861
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.861
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.861
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.861
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.861
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.861
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.861
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.861
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.861
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.861
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.861
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.861
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.861
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.861
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.861
CPEB3 Sorex araneus ENSSARG00000001994 I 0.855
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.855
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.855
CPEB3 Equus caballus ENSECAG00000000077 I 0.855
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.854
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.854
cpeb3 Danio rerio ENSDARG00000060103 I 0.848
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.847
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.847
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.847
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.847
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.847
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.847
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.847
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.847
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.847
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.847
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.847
CPEB2 Gallus gallus ENSGALG00000014516 I 0.847
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.847
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.847
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.847
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.847
CPEB2 Bos taurus ENSBTAG00000019847 I 0.847
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.847
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.847
CPEB2 Equus caballus ENSECAG00000008722 I 0.847
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.847
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.847
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.847
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.847
CPEB2 Homo sapiens ENSG00000137449 D 0.847
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.839
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.839
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.839
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.835
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.833
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.831
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.831
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.827
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.826
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.826
PHUM335520 Pediculus humanus PHUM335520 I 0.824
ISCW010113 Ixodes scapularis ISCW010113 I 0.819
GF10140 Drosophila ananassae FBgn0087181 I 0.818
GH16131 Drosophila grimshawi FBgn0123602 I 0.816
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.812
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.812
GL20808 Drosophila persimilis FBgn0158403 I 0.810
GJ12289 Drosophila virilis FBgn0199538 I 0.810
GI12400 Drosophila mojavensis FBgn0135157 I 0.810
GG15051 Drosophila erecta FBgn0107305 I 0.810
orb2 Drosophila melanogaster FBgn0262573 D 0.810
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.810
GK17460 Drosophila willistoni FBgn0219459 I 0.810
GE21274 Drosophila yakuba FBgn0238542 I 0.810
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.806
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.804
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.804
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.804
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.804
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.803
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.797
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.796
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.790
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.779
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.775
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.766
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.752
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.752
CPEB2 Sorex araneus ENSSARG00000010559 I 0.752
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.743
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.736
CPEB2 Danio rerio ENSDARG00000052604 I 0.730
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.729
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.725
AGAP002296 Anopheles gambiae AGAP002296 I 0.725
111676 Helobdella robusta 111676 I 0.710
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.710
CPEB2 Dasypus novemcinctus ENSDNOG00000016610 N 0.710
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.702