cassava30949.valid.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava30949.valid.m1 T24700_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30949.valid.m1 PUF 678 711
cassava30949.valid.m1 PUF 714 748
cassava30949.valid.m1 PUF 751 784
cassava30949.valid.m1 PUF 786 820
cassava30949.valid.m1 PUF 822 854
cassava30949.valid.m1 PUF 859 893
cassava30949.valid.m1 PUF 895 929
cassava30949.valid.m1 PUF 942 971

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.000
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.000
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.000
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.000
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.000
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.000
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.000
GRMZM2G005743 Zea mays GRMZM2G005743 N 0.000
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.000
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.000
MDP0000583927 Malus x domestica MDP0000583927 N 0.000
mgf013695m Mimulus guttatus mgf013695m N 0.000
mgf016209m Mimulus guttatus mgf016209m N 0.000
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.000
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.000
ppa008562m Prunus persica ppa008562m N 0.000
SB04G001910 Sorghum bicolor Sb04g001910 N 0.000