cassava30949.valid.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava30949.valid.m1 T24700_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30949.valid.m1 PUF 678 711
cassava30949.valid.m1 PUF 714 748
cassava30949.valid.m1 PUF 751 784
cassava30949.valid.m1 PUF 786 820
cassava30949.valid.m1 PUF 822 854
cassava30949.valid.m1 PUF 859 893
cassava30949.valid.m1 PUF 895 929
cassava30949.valid.m1 PUF 942 971

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.754
30143.m001162 Ricinus communis 30143.m001162 N 0.812
30143.m001164 Ricinus communis 30143.m001164 N 0.851
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.873
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.877
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.884
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.714
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.792
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.803
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.788
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.788
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.720
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.732
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.855
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.967
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.963
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 1.000
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.768
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.905
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.822
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.746
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.769
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.784
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.754
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.735
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.781
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.873
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.884
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.750
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.902
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.909
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.909
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.909
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.913
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.919
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.745
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.791
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.788
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.731
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.743
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.859
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.906
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.787
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.851
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.792
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.728
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.803
MDP0000176743 Malus x domestica MDP0000176743 N 0.732
MDP0000191652 Malus x domestica MDP0000191652 N 0.875
MDP0000314338 Malus x domestica MDP0000314338 N 0.851
MDP0000319167 Malus x domestica MDP0000319167 N 0.930
MDP0000776183 Malus x domestica MDP0000776183 N 0.848
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.905
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.895
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.783
mgf011401m Mimulus guttatus mgf011401m N 0.753
mgf015234m Mimulus guttatus mgf015234m N 0.825
mgf015734m Mimulus guttatus mgf015734m N 0.897
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.712
PK00601.1 Cannabis sativa PK00601.1 N 0.851
PK01617.1 Cannabis sativa PK01617.1 N 0.762
PK21390.1 Cannabis sativa PK21390.1 N 0.916
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.923
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.754
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.855
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.923
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.862
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.750
ppa000626m Prunus persica ppa000626m N 0.851
ppa000627m Prunus persica ppa000627m N 0.923
ppa000731m Prunus persica ppa000731m N 0.768
SB03G039600 Sorghum bicolor Sb03g039600 N 0.851
SB04G037410 Sorghum bicolor Sb04g037410 N 0.735
SB09G001090 Sorghum bicolor Sb09g001090 N 0.795
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.707
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.873