B9GPU7_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s15490 T45463_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s15490.1 RRM 4 65
POPTR_0002s15490.1 RRM 96 159

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.944
PK24775.1 Cannabis sativa PK24775.1 N 0.865
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.859
ppa005993m Prunus persica ppa005993m N 0.849
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.849
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.849
ppa008562m Prunus persica ppa008562m N 0.844
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.841
MDP0000288452 Malus x domestica MDP0000288452 N 0.841
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.841
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.833
MDP0000583927 Malus x domestica MDP0000583927 N 0.828
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.825
mgf011722m Mimulus guttatus mgf011722m N 0.825
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.825
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.825
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.825
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.817
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.817
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.814
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.794
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.794
PK11625.1 Cannabis sativa PK11625.1 N 0.773
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.770
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.770
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.770
mgf013695m Mimulus guttatus mgf013695m N 0.758
mgf016209m Mimulus guttatus mgf016209m N 0.758
SB04G001910 Sorghum bicolor Sb04g001910 N 0.742
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.740
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.732
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.730
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.724
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.724
estExt_fgenesh1_pg.C_1440043 Physcomitrella patens estExt_fgenesh1_pg.C_1440043 N 0.722
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.719
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.709
mgf011632m Mimulus guttatus mgf011632m N 0.709
PK15848.1 Cannabis sativa PK15848.1 N 0.701