ppa008562m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa008562m T58398_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa008562m RRM 4 65
ppa008562m RRM 97 160

Links

Other RRM family RBPs
Other Prunus persica RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000583927 Malus x domestica MDP0000583927 N 0.922
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.875
PK11625.1 Cannabis sativa PK11625.1 N 0.866
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.844
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.820
ppa005993m Prunus persica ppa005993m N 0.805
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.797
MDP0000288452 Malus x domestica MDP0000288452 N 0.797
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.797
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.797
mgf013695m Mimulus guttatus mgf013695m N 0.795
mgf016209m Mimulus guttatus mgf016209m N 0.795
PK24775.1 Cannabis sativa PK24775.1 N 0.789
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.789
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.789
mgf011722m Mimulus guttatus mgf011722m N 0.781
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.781
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.781
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.773
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.766
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.766
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.766
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.766
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.766
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.758
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.758
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.750
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.742
SB04G001910 Sorghum bicolor Sb04g001910 N 0.708
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.700