MDP0000583927 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000583927 T57695_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000583927 RRM 4 65
MDP0000583927 RRM 96 161

Links

Other RRM family RBPs
Other Malus x domestica RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa008562m Prunus persica ppa008562m N 0.922
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.860
PK11625.1 Cannabis sativa PK11625.1 N 0.844
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.828
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.820
ppa005993m Prunus persica ppa005993m N 0.812
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.805
MDP0000288452 Malus x domestica MDP0000288452 N 0.805
PK24775.1 Cannabis sativa PK24775.1 N 0.805
mgf013695m Mimulus guttatus mgf013695m N 0.797
mgf011722m Mimulus guttatus mgf011722m N 0.797
mgf016209m Mimulus guttatus mgf016209m N 0.797
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.789
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.789
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.789
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.789
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.789
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.781
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.781
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.766
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.766
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.758
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.758
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.758
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.758
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.742
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.742
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.734
SB04G001910 Sorghum bicolor Sb04g001910 N 0.708
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.700