XM_002869624.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.7__1711__AT4G25500.1 T44578_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__1711__AT4G25500.1 RRM 4 65
fgenesh2_kg.7__1711__AT4G25500.1 RRM 99 162

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.968
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.937
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.913
mgf011722m Mimulus guttatus mgf011722m N 0.833
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.833
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.825
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.820
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.817
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.817
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.817
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.817
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.810
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.810
ppa005993m Prunus persica ppa005993m N 0.810
MDP0000288452 Malus x domestica MDP0000288452 N 0.802
PK24775.1 Cannabis sativa PK24775.1 N 0.802
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.802
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.794
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.794
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.794
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.786
ppa008562m Prunus persica ppa008562m N 0.773
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.767
PK11625.1 Cannabis sativa PK11625.1 N 0.766
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.762
mgf013695m Mimulus guttatus mgf013695m N 0.758
MDP0000583927 Malus x domestica MDP0000583927 N 0.758
mgf016209m Mimulus guttatus mgf016209m N 0.758
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.730
SB04G001910 Sorghum bicolor Sb04g001910 N 0.719
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.719
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.709
estExt_fgenesh1_pg.C_1440043 Physcomitrella patens estExt_fgenesh1_pg.C_1440043 N 0.706