CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GLRG_00145
(
Colletotrichum graminicola
)
PUF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
PF00076 (RRM_1)
IPR001313
IPR000504
GLRG_00145
T25306_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLRG_00145T0
RRM
448
509
LWLGSIPTSTTTSTLTEMFKSYGPILSARVLTHKNCGFVNFERMESAITAKASMNGKEIFPG
GLRG_00145T0
PUF
657
691
DMLPEIAELSSDYLGNTVVQKLFEHCSDELRDAML
GLRG_00145T0
PUF
693
728
AISPHMAEIGVHKNGTWAAQKIIDVCKTPHQMTLIV
GLRG_00145T0
PUF
731
763
LRPYTIPLFLDQYGNYVLQGCLKFGAPFNDFIF
GLRG_00145T0
PUF
765
800
TMLSRMWEVAQGRYGARAMRACLESHHATKEQQRML
GLRG_00145T0
PUF
804
837
IALHSVQLATNANGALLLTWFLDTCTFPQRRTVL
Links
Other
PUF,RRM
family RBPs
Other
Colletotrichum graminicola
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_03872
Arthroderma benhamiae
ARB_03872
N
0.793
BC1G_15545
Botrytis cinerea
BC1G_15545
N
0.835
BDBG_08030
Blastomyces dermatitidis
BDBG_08030
N
0.789
ACLA_089090
Aspergillus clavatus
CADACLAG00008911
N
0.822
AFLA_129760
Aspergillus flavus
CADAFLAG00010034
N
0.790
AFUA_2G05610
Aspergillus fumigatus
CADAFUAG00003379
N
0.802
An02g13940
Aspergillus niger
CADANGAG00002920
N
0.810
ANIA_07474
Aspergillus nidulans
CADANIAG00000567
N
0.785
AO090001000672
Aspergillus oryzae
CADAORAG00000614
N
0.790
ATEG_06748
Aspergillus terreus
CADATEAG00008207
N
0.789
NFIA_082330
Neosartorya fischeri
CADNFIAG00006734
N
0.806
CHGG_03262
Chaetomium globosum
CHGG_03262
N
0.915
CIMG_00764
Coccidioides immitis
CIMG_00764
N
0.802
CPSG_07974
Coccidioides posadasii
CPSG_07974
N
0.802
EAT78761.1
Phaeosphaeria nodorum
EAT78761.1
N
0.726
estExt_fgenesh1_pm.C_60200
Neurospora tetrasperma
estExt_fgenesh1_pm.C_60200
N
0.924
estExt_fgenesh3_pm.C_50632
Neurospora discreta
estExt_fgenesh3_pm.C_50632
N
0.928
estExt_Genewise1Plus.C_10494
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_10494
N
0.729
estExt_Genewise1Plus.C_30707
Thielavia terrestris
estExt_Genewise1Plus.C_30707
N
0.814
estExt_Genewise1Plus.C_40921
Myceliophthora thermophila
estExt_Genewise1Plus.C_40921
N
0.907
e_gw1.1.1743.1
Cryphonectria parasitica
e_gw1.1.1743.1
N
0.826
e_gw1.10.966.1
Trichoderma atroviride
e_gw1.10.966.1
N
0.852
e_gw1.3.863.1
Nectria haematococca
e_gw1.3.863.1
N
0.941
fgenesh1_pm.00082_#_71
Aspergillus carbonarius
fgenesh1_pm.00082_#_71
N
0.810
fgenesh1_pm.C_chr_3000287
Mycosphaerella graminicola
fgenesh1_pm.C_chr_3000287
N
0.710
FGSG_13028
Fusarium graminearum
FGSG_13028
N
0.928
FOXG_01859
Fusarium oxysporum
FOXG_01859
N
0.919
FVEG_08236
Fusarium verticillioides
FVEG_08236
N
0.924
GSTUMT00008056001
Tuber melanosporum
GSTUMT00008056001
N
0.792
gw1.1.1237.1
Trichoderma reesei
gw1.1.1237.1
N
0.869
gw1.2.1414.1
Trichoderma virens
gw1.2.1414.1
N
0.848
HCAG_00994
Histoplasma capsulatum
HCAG_00994
N
0.789
MCYG_03539
Microsporum canis
MCYG_03539
N
0.793
MGG_06318
Magnaporthe oryzae
MGG_06318
N
0.924
MGYG_03148
Microsporum gypseum
MGYG_03148
N
0.793
NCU06199
Neurospora crassa
NCU06199
N
0.924
PABG_04750
Paracoccidioides brasiliensis
PABG_04750
N
0.785
Pa_7_8390
Podospora anserina
Pa_7_8390
N
0.805
Pc22g08770
Penicillium chrysogenum
Pc22g08770
N
0.785
PMAA_071510
Penicillium marneffei
PMAA_071510
N
0.806
PTRG_10794
Pyrenophora tritici repentis
PTRG_10794
N
0.720
SNOG_13737
Stagonospora nodorum
SNOG_13737
N
0.726
SS1G_13666
Sclerotinia sclerotiorum
SS1G_13666
N
0.847
TEQG_01260
Trichophyton equinum
TEQG_01260
N
0.793
TERG_04970
Trichophyton rubrum
TERG_04970
N
0.793
TESG_05413
Trichophyton tonsurans
TESG_05413
N
0.789
TRV_06639
Trichophyton verrucosum
TRV_06639
N
0.789
UREG_00739
Uncinocarpus reesii
UREG_00739
N
0.789
VDAG_05840
Verticillium dahliae
VDAG_05840
N
0.941
VDBG_06774
Verticillium albo atrum
VDBG_06774
N
0.941