VDAG_05840 (Verticillium dahliae)
PUF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF)
PF00076 (RRM_1) 		IPR001313
IPR000504 		VDAG_05840 T25332_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
VDAG_05840T0 RRM 406 467
VDAG_05840T0 PUF 617 651
VDAG_05840T0 PUF 653 687
VDAG_05840T0 PUF 691 723
VDAG_05840T0 PUF 725 760
VDAG_05840T0 PUF 764 797

Links

Other PUF,RRM family RBPs
Other Verticillium dahliae RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
VDBG_06774 Verticillium albo atrum VDBG_06774 N 1.000
GLRG_00145 Colletotrichum graminicola GLRG_00145 N 0.941
e_gw1.3.863.1 Nectria haematococca e_gw1.3.863.1 N 0.936
FGSG_13028 Fusarium graminearum FGSG_13028 N 0.932
FVEG_08236 Fusarium verticillioides FVEG_08236 N 0.928
FOXG_01859 Fusarium oxysporum FOXG_01859 N 0.924
CHGG_03262 Chaetomium globosum CHGG_03262 N 0.924
estExt_fgenesh3_pm.C_50632 Neurospora discreta estExt_fgenesh3_pm.C_50632 N 0.924
NCU06199 Neurospora crassa NCU06199 N 0.919
estExt_fgenesh1_pm.C_60200 Neurospora tetrasperma estExt_fgenesh1_pm.C_60200 N 0.919
MGG_06318 Magnaporthe oryzae MGG_06318 N 0.916
estExt_Genewise1Plus.C_40921 Myceliophthora thermophila estExt_Genewise1Plus.C_40921 N 0.902
gw1.1.1237.1 Trichoderma reesei gw1.1.1237.1 N 0.878
e_gw1.10.966.1 Trichoderma atroviride e_gw1.10.966.1 N 0.860
SS1G_13666 Sclerotinia sclerotiorum SS1G_13666 N 0.847
gw1.2.1414.1 Trichoderma virens gw1.2.1414.1 N 0.844
BC1G_15545 Botrytis cinerea BC1G_15545 N 0.831
e_gw1.1.1743.1 Cryphonectria parasitica e_gw1.1.1743.1 N 0.822
ACLA_089090 Aspergillus clavatus CADACLAG00008911 N 0.809
estExt_Genewise1Plus.C_30707 Thielavia terrestris estExt_Genewise1Plus.C_30707 N 0.797
CIMG_00764 Coccidioides immitis CIMG_00764 N 0.793
CPSG_07974 Coccidioides posadasii CPSG_07974 N 0.793
UREG_00739 Uncinocarpus reesii UREG_00739 N 0.792
An02g13940 Aspergillus niger CADANGAG00002920 N 0.789
Pa_7_8390 Podospora anserina Pa_7_8390 N 0.788
BDBG_08030 Blastomyces dermatitidis BDBG_08030 N 0.785
HCAG_00994 Histoplasma capsulatum HCAG_00994 N 0.785
PMAA_071510 Penicillium marneffei PMAA_071510 N 0.781
fgenesh1_pm.00082_#_71 Aspergillus carbonarius fgenesh1_pm.00082_#_71 N 0.781
GSTUMT00008056001 Tuber melanosporum GSTUMT00008056001 N 0.780
ARB_03872 Arthroderma benhamiae ARB_03872 N 0.776
MGYG_03148 Microsporum gypseum MGYG_03148 N 0.776
TERG_04970 Trichophyton rubrum TERG_04970 N 0.776
ATEG_06748 Aspergillus terreus CADATEAG00008207 N 0.776
TEQG_01260 Trichophyton equinum TEQG_01260 N 0.776
MCYG_03539 Microsporum canis MCYG_03539 N 0.776
NFIA_082330 Neosartorya fischeri CADNFIAG00006734 N 0.776
AFLA_129760 Aspergillus flavus CADAFLAG00010034 N 0.773
AO090001000672 Aspergillus oryzae CADAORAG00000614 N 0.773
AFUA_2G05610 Aspergillus fumigatus CADAFUAG00003379 N 0.772
TESG_05413 Trichophyton tonsurans TESG_05413 N 0.772
PABG_04750 Paracoccidioides brasiliensis PABG_04750 N 0.772
ANIA_07474 Aspergillus nidulans CADANIAG00000567 N 0.772
TRV_06639 Trichophyton verrucosum TRV_06639 N 0.772
Pc22g08770 Penicillium chrysogenum Pc22g08770 N 0.768
EAT78761.1 Phaeosphaeria nodorum EAT78761.1 N 0.738
SNOG_13737 Stagonospora nodorum SNOG_13737 N 0.738
estExt_Genewise1Plus.C_10494 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_10494 N 0.733
PTRG_10794 Pyrenophora tritici repentis PTRG_10794 N 0.729
fgenesh1_pm.C_chr_3000287 Mycosphaerella graminicola fgenesh1_pm.C_chr_3000287 N 0.714