BRADI1G52280 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI1G52280 T33152_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G52280.1 RRM 200 265
BRADI1G52280.1 RRM 285 350
BRADI1G52280.1 RRM 684 755

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.873
29693.m002077 Ricinus communis 29693.m002077 N 0.877
30147.m014409 Ricinus communis 30147.m014409 N 0.828
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.819
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.824
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.725
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.824
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.794
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.961
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.843
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.809
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.701
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.819
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.755
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.755
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.721
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.721
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.897
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.897
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.897
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.897
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.897
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.892
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.882
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.863
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.863
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.828
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.848
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.858
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.853
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.868
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.858
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.725
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.765
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.882
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.877
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.882
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.887
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.966
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.776
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.966
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.843
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.873
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.897
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.824
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.794
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.961
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.873
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.721
mgf000415m Mimulus guttatus mgf000415m N 0.814
mgf005765m Mimulus guttatus mgf005765m N 0.859
mgf014747m Mimulus guttatus mgf014747m N 0.863
mgf015667m Mimulus guttatus mgf015667m N 0.814
mgf023970m Mimulus guttatus mgf023970m N 0.807
PK15886.1 Cannabis sativa PK15886.1 N 0.804
PK19379.1 Cannabis sativa PK19379.1 N 0.760
PK24656.1 Cannabis sativa PK24656.1 N 0.873
PK25465.1 Cannabis sativa PK25465.1 N 0.873
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.815
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.892
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.794
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.882
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.775
ppa000845m Prunus persica ppa000845m N 0.824
ppa000997m Prunus persica ppa000997m N 0.794
ppa001307m Prunus persica ppa001307m N 0.887
ppa001327m Prunus persica ppa001327m N 0.887
SB04G021130 Sorghum bicolor Sb04g021130 N 0.795
SB10G000350 Sorghum bicolor Sb10g000350 N 0.971