ENSCJAG00000002606 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000002606 T35485_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.775
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.775
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.775
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000004726 RRM 16 80
ENSCJAP00000004726 RRM 102 168

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.738
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.724
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.738
LOC785445 Bos taurus ENSBTAG00000025621 I 0.703
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.732
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.710
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.721
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.738
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.705
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.710
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.729
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.748
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.724
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.734
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.712
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.713
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.711
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.708
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.708
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.715
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.722
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.717
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.731
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.704
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.731
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.738
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.738
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.710
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.717
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.738
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.717
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.738
LOC100054206 Equus caballus ENSECAG00000006699 I 0.722
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.738
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.710
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.731
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.738
HNRNPA1 Homo sapiens ENSG00000135486 D 0.738
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.717
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.738
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.738
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.745
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.710
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.731
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.738
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.708
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.724
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.714
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.717
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.738
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.711
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.730
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.731
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.745
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.719
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.710
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.738
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.724
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.738
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.703
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.745
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.731
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.710
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.724
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.731
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.738
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.731
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.709
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.717
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.731
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.700
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.717
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.738
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.738
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.738
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.710
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.738
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.710
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.738
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.738
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.710
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.738