CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMMUG00000005750
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000005750
T38839_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.830
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.830
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.830
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.809
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000007589
RRM
13
82
LFIGRLGFEITDESLRKHSEPWGILKDYVVRRDPKTKSSRGFGFVTYATVEEVDAAMNARPHKLDGRVVE
ENSMMUP00000007589
RRM
104
173
IFVGGIKEDTEEHHLRDYSEQYGKTEVTEIMTDRGSVKKRGFAFIPFDDHDFVDKTVIQKFHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
201 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_844664.1
Canis familiaris
ENSCAFG00000000687
I
0.789
ENSGGOG00000025381
Gorilla gorilla
ENSGGOG00000025381
I
0.786
ENSMMUG00000022448
Macaca mulatta
ENSMMUG00000022448
I
0.780
HNRNPA1L2
Pan troglodytes
ENSPTRG00000032520
I
0.779
ENSPVAG00000000322
Pteropus vampyrus
ENSPVAG00000000322
I
0.779
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.779
Hnrnpa1
Rattus norvegicus
ENSRNOG00000036839
I
0.779
ENSTBEG00000008238
Tupaia belangeri
ENSTBEG00000008238
I
0.779
ROA1_PANTR
Pan troglodytes
ENSPTRG00000005035
I
0.779
Q6DTK6_HORSE
Equus caballus
ENSECAG00000008676
I
0.779
ROA1_PANTR
Pan troglodytes
ENSPTRG00000028756
I
0.779
ENSMLUG00000000648
Myotis lucifugus
ENSMLUG00000000648
I
0.779
ROA1_PANTR
Pan troglodytes
ENSPTRG00000031363
I
0.779
Ame_R011792
Ailuropoda melanoleuca
Ame_R011792
I
0.779
LOC100397230
Callithrix jacchus
ENSCJAG00000018864
I
0.779
HNRNPA1
Gorilla gorilla
ENSGGOG00000003040
I
0.779
ENSFCAG00000010150
Felis catus
ENSFCAG00000010150
I
0.779
XM_534786.2
Canis familiaris
ENSCAFG00000006580
I
0.779
ENSCJAG00000019479
Callithrix jacchus
ENSCJAG00000019479
I
0.779
ROA1_BOVIN
Bos taurus
ENSBTAG00000001553
I
0.779
ENSDNOG00000009228
Dasypus novemcinctus
ENSDNOG00000009228
I
0.779
ENSOCUG00000023674
Oryctolagus cuniculus
ENSOCUG00000023674
I
0.779
ENSCJAG00000033856
Callithrix jacchus
ENSCJAG00000033856
I
0.779
ENSTTRG00000004505
Tursiops truncatus
ENSTTRG00000004505
I
0.779
ENSSSCG00000000288
Sus scrofa
ENSSSCG00000000288
I
0.779
ENSOCUG00000021007
Oryctolagus cuniculus
ENSOCUG00000021007
I
0.779
ENSOCUG00000013350
Oryctolagus cuniculus
ENSOCUG00000013350
I
0.779
HNRNPA1
Homo sapiens
ENSG00000135486
D
0.779
ENSMLUG00000003232
Myotis lucifugus
ENSMLUG00000003232
I
0.779
Hnrnpa1
Mus musculus
ENSMUSG00000046434
I
0.779
LOC710473
Macaca mulatta
ENSMMUG00000012989
I
0.779
LOC710473
Macaca mulatta
ENSMMUG00000007887
I
0.779
ENSPPYG00000017853
Pongo pygmaeus
ENSPPYG00000017853
I
0.772
ROA1_MACMU
Macaca mulatta
ENSMMUG00000031613
I
0.772
ENSEEUG00000000494
Erinaceus europaeus
ENSEEUG00000000494
I
0.772
ENSACAG00000007169
Anolis carolinensis
ENSACAG00000007169
I
0.772
LOC710473
Macaca mulatta
ENSMMUG00000029402
I
0.772
ENSLAFG00000029587
Loxodonta africana
ENSLAFG00000029587
I
0.772
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.772
LOC100413454
Callithrix jacchus
ENSCJAG00000009030
I
0.772
LOC100397230
Callithrix jacchus
ENSCJAG00000004031
I
0.772
ENSOCUG00000022568
Oryctolagus cuniculus
ENSOCUG00000022568
I
0.772
ENSOCUG00000028124
Oryctolagus cuniculus
ENSOCUG00000028124
I
0.772
ENSOPRG00000006107
Ochotona princeps
ENSOPRG00000006107
I
0.772
LOC100054206
Equus caballus
ENSECAG00000006699
I
0.771
ENSCAFG00000017316
Canis familiaris
ENSCAFG00000017316
I
0.768
ENSCAFG00000010153
Canis familiaris
ENSCAFG00000010153
I
0.766
LOC710473
Macaca mulatta
ENSMMUG00000007928
I
0.766
ENSEEUG00000006130
Erinaceus europaeus
ENSEEUG00000006130
I
0.766
ENSOCUG00000010985
Oryctolagus cuniculus
ENSOCUG00000010985
I
0.766
ENSOCUG00000023322
Oryctolagus cuniculus
ENSOCUG00000023322
I
0.766
ENSMUSG00000021927
Mus musculus
ENSMUSG00000021927
I
0.766
ENSCJAG00000001353
Callithrix jacchus
ENSCJAG00000001353
I
0.764
ENSCAFG00000007879
Canis familiaris
ENSCAFG00000007879
I
0.759
LOC100409067
Callithrix jacchus
ENSCJAG00000003245
I
0.759
ENSOCUG00000022668
Oryctolagus cuniculus
ENSOCUG00000022668
I
0.759
ENSCAFG00000006784
Canis familiaris
ENSCAFG00000006784
I
0.759
ENSCPOG00000021077
Cavia porcellus
ENSCPOG00000021077
I
0.759
ENSOGAG00000009945
Otolemur garnettii
ENSOGAG00000009945
I
0.759
ENSCJAG00000031552
Callithrix jacchus
ENSCJAG00000031552
I
0.759
ENSCJAG00000004902
Callithrix jacchus
ENSCJAG00000004902
I
0.759
HNRNPA1L2
Homo sapiens
ENSG00000139675
D
0.759
D4A491_RAT
Rattus norvegicus
ENSRNOG00000029531
I
0.759
ENSRNOG00000039436
Rattus norvegicus
ENSRNOG00000039436
I
0.759
ENSCAFG00000008379
Canis familiaris
ENSCAFG00000008379
I
0.757
ENSPPYG00000003855
Pongo pygmaeus
ENSPPYG00000003855
I
0.757
ENSCAFG00000011035
Canis familiaris
ENSCAFG00000011035
I
0.757
ENSCJAG00000005407
Callithrix jacchus
ENSCJAG00000005407
I
0.754
LOC100410389
Callithrix jacchus
ENSCJAG00000023392
I
0.752
XM_854536.1
Canis familiaris
ENSCAFG00000005046
I
0.752
ENSOCUG00000021006
Oryctolagus cuniculus
ENSOCUG00000021006
I
0.752
ENSLAFG00000026657
Loxodonta africana
ENSLAFG00000026657
I
0.752
D4AD23_RAT
Rattus norvegicus
ENSRNOG00000025891
I
0.750
XR_010472.1
Macaca mulatta
ENSMMUG00000012991
I
0.750
ENSCAFG00000019118
Canis familiaris
ENSCAFG00000019118
I
0.750
ENSMLUG00000000788
Myotis lucifugus
ENSMLUG00000000788
I
0.750
ENSMMUG00000008337
Macaca mulatta
ENSMMUG00000008337
I
0.750
ENSCAFG00000003418
Canis familiaris
ENSCAFG00000003418
I
0.746
ENSMMUG00000004182
Macaca mulatta
ENSMMUG00000004182
I
0.745
ENSTBEG00000016272
Tupaia belangeri
ENSTBEG00000016272
I
0.745
XM_852631.1
Canis familiaris
ENSCAFG00000023680
I
0.745
LOC785445
Bos taurus
ENSBTAG00000025621
I
0.745
ENSLAFG00000030769
Loxodonta africana
ENSLAFG00000030769
I
0.745
D4A2D2_RAT
Rattus norvegicus
ENSRNOG00000021986
I
0.745
ENSCAFG00000004202
Canis familiaris
ENSCAFG00000004202
I
0.743
ENSCAFG00000015319
Canis familiaris
ENSCAFG00000015319
I
0.743
ENSCAFG00000006036
Canis familiaris
ENSCAFG00000006036
I
0.743
ENSCAFG00000014691
Canis familiaris
ENSCAFG00000014691
I
0.743
ENSCAFG00000013303
Canis familiaris
ENSCAFG00000013303
I
0.743
XR_011984.1
Macaca mulatta
ENSMMUG00000011640
I
0.743
ENSG00000231942
Homo sapiens
ENSG00000231942
I
0.743
ENSMMUG00000004528
Macaca mulatta
ENSMMUG00000004528
I
0.743
ENSMGAG00000007630
Meleagris gallopavo
ENSMGAG00000007630
I
0.740
D4ABW2_RAT
Rattus norvegicus
ENSRNOG00000032168
I
0.739
ENSCJAG00000000095
Callithrix jacchus
ENSCJAG00000000095
I
0.738
ENSMMUG00000031948
Macaca mulatta
ENSMMUG00000031948
I
0.738
ENSRNOG00000033182
Rattus norvegicus
ENSRNOG00000033182
I
0.738
ENSCJAG00000010169
Callithrix jacchus
ENSCJAG00000010169
I
0.738
ENSGGOG00000025827
Gorilla gorilla
ENSGGOG00000025827
I
0.738
ENSOGAG00000002398
Otolemur garnettii
ENSOGAG00000002398
I
0.738
ENSCAFG00000020238
Canis familiaris
ENSCAFG00000020238
I
0.736
XM_001106745.1
Macaca mulatta
ENSMMUG00000031809
I
0.736
ENSCAFG00000018186
Canis familiaris
ENSCAFG00000018186
I
0.736
ENSOGAG00000017179
Otolemur garnettii
ENSOGAG00000017179
I
0.736
ENSCJAG00000015222
Callithrix jacchus
ENSCJAG00000015222
I
0.736
ENSCAFG00000017494
Canis familiaris
ENSCAFG00000017494
I
0.736
ENSCAFG00000000746
Canis familiaris
ENSCAFG00000000746
I
0.734
ENSMODG00000006291
Monodelphis domestica
ENSMODG00000006291
I
0.733
ENSCJAG00000035202
Callithrix jacchus
ENSCJAG00000035202
I
0.731
ENSTBEG00000012511
Tupaia belangeri
ENSTBEG00000012511
I
0.731
ENSCAFG00000024951
Canis familiaris
ENSCAFG00000024951
I
0.731
ENSCJAG00000016375
Callithrix jacchus
ENSCJAG00000016375
I
0.731
ENSRNOG00000005951
Rattus norvegicus
ENSRNOG00000005951
I
0.731
ENSBTAG00000009937
Bos taurus
ENSBTAG00000009937
I
0.730
XM_543834.2
Canis familiaris
ENSCAFG00000002157
I
0.729
ENSCAFG00000001973
Canis familiaris
ENSCAFG00000001973
I
0.729
ENSMICG00000009289
Microcebus murinus
ENSMICG00000009289
I
0.729
ENSCAFG00000019104
Canis familiaris
ENSCAFG00000019104
I
0.729
ENSCAFG00000020428
Canis familiaris
ENSCAFG00000020428
I
0.729
ENSMICG00000012083
Microcebus murinus
ENSMICG00000012083
I
0.725
ENSCJAG00000032970
Callithrix jacchus
ENSCJAG00000032970
I
0.724
LOC100397230
Callithrix jacchus
ENSCJAG00000014791
I
0.724
ENSCJAG00000032417
Callithrix jacchus
ENSCJAG00000032417
I
0.724
ENSCJAG00000009723
Callithrix jacchus
ENSCJAG00000009723
I
0.724
XM_855847.1
Canis familiaris
ENSCAFG00000006327
I
0.724
ENSOCUG00000022627
Oryctolagus cuniculus
ENSOCUG00000022627
I
0.724
ENSCJAG00000007250
Callithrix jacchus
ENSCJAG00000007250
I
0.724
ENSGGOG00000024290
Gorilla gorilla
ENSGGOG00000024290
I
0.721
ENSCJAG00000034783
Callithrix jacchus
ENSCJAG00000034783
I
0.721
ENSGGOG00000027762
Gorilla gorilla
ENSGGOG00000027762
I
0.721
ENSSARG00000008946
Sorex araneus
ENSSARG00000008946
I
0.720
Hnrnpa1
Dipodomys ordii
ENSDORG00000010628
I
0.720
ENSMMUG00000013424
Macaca mulatta
ENSMMUG00000013424
I
0.718
ENSCAFG00000018456
Canis familiaris
ENSCAFG00000018456
I
0.718
ENSCAFG00000006663
Canis familiaris
ENSCAFG00000006663
I
0.718
hnrnpa1
Xenopus tropicalis
ENSXETG00000021277
I
0.717
AAH45260
Xenopus laevis
AAH45260
I
0.717
ENSCJAG00000020672
Callithrix jacchus
ENSCJAG00000020672
I
0.717
ENSCJAG00000033784
Callithrix jacchus
ENSCJAG00000033784
I
0.717
ENSCAFG00000002059
Canis familiaris
ENSCAFG00000002059
I
0.717
ENSCAFG00000005308
Canis familiaris
ENSCAFG00000005308
I
0.717
ENSCAFG00000005207
Canis familiaris
ENSCAFG00000005207
I
0.717
ENSMMUG00000007695
Macaca mulatta
ENSMMUG00000007695
I
0.717
ENSCAFG00000009606
Canis familiaris
ENSCAFG00000009606
I
0.716
ENSCAFG00000003493
Canis familiaris
ENSCAFG00000003493
I
0.715
ENSBTAG00000021755
Bos taurus
ENSBTAG00000021755
I
0.714
ENSCJAG00000002606
Callithrix jacchus
ENSCJAG00000002606
I
0.714
ENSCAFG00000024636
Canis familiaris
ENSCAFG00000024636
I
0.714
ENSCJAG00000007634
Callithrix jacchus
ENSCJAG00000007634
I
0.711
ENSCAFG00000007198
Canis familiaris
ENSCAFG00000007198
I
0.711
ENSGGOG00000027879
Gorilla gorilla
ENSGGOG00000027879
I
0.710
ENSCJAG00000001737
Callithrix jacchus
ENSCJAG00000001737
I
0.710
ENSETEG00000015332
Echinops telfairi
ENSETEG00000015332
I
0.710
ENSSTOG00000015259
Spermophilus tridecemlineatus
ENSSTOG00000015259
I
0.710
XP_541811.1
Canis familiaris
ENSCAFG00000006586
I
0.710
CBF67672
Xenopus laevis
CBF67672
I
0.710
AAH72090
Xenopus laevis
AAH72090
I
0.710
CBU92546
Xenopus laevis
CBU92546
I
0.710
ENSGGOG00000022797
Gorilla gorilla
ENSGGOG00000022797
I
0.709
ENSMODG00000023422
Monodelphis domestica
ENSMODG00000023422
I
0.708
ENSCAFG00000024824
Canis familiaris
ENSCAFG00000024824
I
0.708
ENSCAFG00000023056
Canis familiaris
ENSCAFG00000023056
I
0.707
ENSCJAG00000034743
Callithrix jacchus
ENSCJAG00000034743
I
0.707
ENSCJAG00000005326
Callithrix jacchus
ENSCJAG00000005326
I
0.707
ENSETEG00000018059
Echinops telfairi
ENSETEG00000018059
I
0.707
ENSGACG00000009435
Gasterosteus aculeatus
ENSGACG00000009435
I
0.703
ENSGGOG00000025265
Gorilla gorilla
ENSGGOG00000025265
I
0.703
ENSCAFG00000008301
Canis familiaris
ENSCAFG00000008301
I
0.703
XP_848548.1
Canis familiaris
ENSCAFG00000016313
I
0.703
ENSCJAG00000017130
Callithrix jacchus
ENSCJAG00000017130
I
0.703
ENSCAFG00000005164
Canis familiaris
ENSCAFG00000005164
I
0.703
HNRNPA2B1
Pteropus vampyrus
ENSPVAG00000006296
I
0.700
HNRNPA2B1
Meleagris gallopavo
ENSMGAG00000010635
I
0.700
Hnrnpa2b1
Rattus norvegicus
ENSRNOG00000011175
I
0.700
ENSSSCG00000015836
Sus scrofa
ENSSSCG00000015836
I
0.700
ENSMEUG00000001084
Macropus eugenii
ENSMEUG00000001084
I
0.700
ENSMEUG00000014479
Macropus eugenii
ENSMEUG00000014479
I
0.700
ENSPPYG00000017715
Pongo pygmaeus
ENSPPYG00000017715
I
0.700
HNRNPA2B1
Macaca mulatta
ENSMMUG00000003619
I
0.700
Hnrnpa2b1
Mus musculus
ENSMUSG00000004980
I
0.700
HNRNPA2B1
Monodelphis domestica
ENSMODG00000000603
I
0.700
HNRNPA2B1
Myotis lucifugus
ENSMLUG00000007578
I
0.700
HNRNPA2B1
Ornithorhynchus anatinus
ENSOANG00000009159
I
0.700
ENSSTOG00000006202
Spermophilus tridecemlineatus
ENSSTOG00000006202
I
0.700
HNRNPA2B1
Oryctolagus cuniculus
ENSOCUG00000026859
I
0.700
HNRNPA2B1
Pan troglodytes
ENSPTRG00000019002
I
0.700
HNRNPA2B1
Loxodonta africana
ENSLAFG00000006902
I
0.700
ENSCJAG00000021872
Callithrix jacchus
ENSCJAG00000021872
I
0.700
Q5ZME1_CHICK
Gallus gallus
ENSGALG00000011036
I
0.700
HNRNPA2B1
Dasypus novemcinctus
ENSDNOG00000012928
I
0.700
Hnrnpa2b1
Dipodomys ordii
ENSDORG00000005482
I
0.700
HNRNPA2B1
Echinops telfairi
ENSETEG00000018577
I
0.700
LOC100068539
Equus caballus
ENSECAG00000000782
I
0.700
HNRNPA2B1
Gorilla gorilla
ENSGGOG00000017072
I
0.700
LOC100401647
Callithrix jacchus
ENSCJAG00000007908
I
0.700
HNRNPA2B1
Tursiops truncatus
ENSTTRG00000000709
I
0.700
HNRNPA2B1
Homo sapiens
ENSG00000122566
D
0.700
Ame_R000626
Ailuropoda melanoleuca
Ame_R000626
I
0.700
ROA2_BOVIN
Bos taurus
ENSBTAG00000005726
I
0.700
HNRNPA2B1
Canis familiaris
ENSCAFG00000002885
I
0.700
HNRNPA2B1
Taeniopygia guttata
ENSTGUG00000002869
I
0.700