ENSCAFG00000006663 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000006663 T35045_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.826
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.826
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.826
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000022575 RRM 16 84
ENSCAFP00000022575 RRM 104 171

Links

Other RRM family RBPs
Other Canis familiaris RBPs

223 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.816
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.799
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.796
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.796
HNRNPA1 Homo sapiens ENSG00000135486 D 0.796
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.796
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.796
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.796
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.796
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.796
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.796
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.796
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.796
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.796
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.796
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.796
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.796
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.796
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.796
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.796
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.796
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.796
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.796
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.796
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.796
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.796
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.796
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.796
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.796
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.796
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.793
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.789
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.789
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.789
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.789
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.789
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.789
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.789
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.789
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.787
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.782
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.782
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.782
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.782
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.782
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.782
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.782
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.782
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.782
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.782
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.782
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.782
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.782
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.781
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.780
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.776
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.776
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.776
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.776
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.776
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.776
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.776
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.774
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.771
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.771
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.769
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.769
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.769
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.769
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.769
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.769
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.769
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.768
LOC100054206 Equus caballus ENSECAG00000006699 I 0.767
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.766
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.762
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.762
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.762
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.762
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.760
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.760
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.760
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.760
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.760
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.760
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.757
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.755
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.755
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.755
LOC785445 Bos taurus ENSBTAG00000025621 I 0.755
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.755
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.755
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.755
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.755
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.754
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.754
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.754
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.753
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.753
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.750
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.750
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.748
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.748
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.748
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.748
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.747
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.746
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.746
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.746
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.743
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.741
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.741
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.741
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.741
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.740
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.740
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.740
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.739
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.739
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.739
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.739
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.738
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.738
D4AB76_RAT Rattus norvegicus ENSRNOG00000032584 I 0.738
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.736
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.735
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.735
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.735
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.735
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.735
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.733
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.732
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.731
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.729
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.728
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.728
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.728
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.728
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.728
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.727
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.726
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.726
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.726
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.726
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.725
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.724
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.722
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.721
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.721
CBF67672 Xenopus laevis CBF67672 I 0.721
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.721
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.721
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.721
AAH72090 Xenopus laevis AAH72090 I 0.721
CBU92546 Xenopus laevis CBU92546 I 0.721
AAH45260 Xenopus laevis AAH45260 I 0.721
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.720
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.718
ENSRNOG00000029434 Rattus norvegicus ENSRNOG00000029434 I 0.718
ENSCJAG00000034783 Callithrix jacchus ENSCJAG00000034783 I 0.718
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.714
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.714
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.714
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.714
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.714
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.714
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.714
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.713
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.713
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.712
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.711
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.709
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.707
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.707
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.707
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.707
P17130 Xenopus laevis P17130 I 0.707
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.707
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.707
AAA49742 Xenopus laevis AAA49742 I 0.707
CBF67555 Xenopus laevis CBF67555 I 0.707
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.707
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.707
AAA49741 Xenopus laevis AAA49741 I 0.707
CBU92428 Xenopus laevis CBU92428 I 0.707
ENSCJAG00000002606 Callithrix jacchus ENSCJAG00000002606 I 0.705
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.704
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.703
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.703
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.703
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.703
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.703
LOC781499 Bos taurus ENSBTAG00000021580 I 0.703
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.703
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.703
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.703
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.703
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.703
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.703
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.703
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.703
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.703
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.703
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.703
HNRNPA3 Homo sapiens ENSG00000170144 I 0.703
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.703
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.703
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.701
ENSRNOG00000017651 Rattus norvegicus ENSRNOG00000017651 I 0.701
ENSCAFG00000017467 Canis familiaris ENSCAFG00000017467 I 0.701
Gm8991 Mus musculus ENSMUSG00000059179 I 0.701
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.701
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.701
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.701
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.701
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.701
LOC100066794 Equus caballus ENSECAG00000023237 I 0.701
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.701
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.701
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.701
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.701
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.701