ENSCSAVG00000004246 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000004246 T35972_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.735
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.735
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.735
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.728
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000007099 RRM 30 98
ENSCSAVP00000007099 RRM 122 151
ENSCSAVP00000007100 RRM 15 85
ENSCSAVP00000007100 RRM 103 171
ENSCSAVP00000007100 RRM 195 264
ENSCSAVP00000007100 RRM 297 365
ENSCSAVP00000007101 RRM 17 87
ENSCSAVP00000007101 RRM 105 173
ENSCSAVP00000007101 RRM 197 266
ENSCSAVP00000007101 RRM 301 369
ENSCSAVP00000007102 RRM 1 70
ENSCSAVP00000007102 RRM 88 156
ENSCSAVP00000007102 RRM 180 249
ENSCSAVP00000007102 RRM 282 350
ENSCSAVP00000007103 RRM 13 83
ENSCSAVP00000007103 RRM 101 169
ENSCSAVP00000007103 RRM 193 262
ENSCSAVP00000007103 RRM 295 363

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL005046 Aedes aegypti AAEL005046 N 0.000
AAH75146 Xenopus laevis AAH75146 N 0.000
AAH77813 Xenopus laevis AAH77813 N 0.000
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.000
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.000
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.000
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.000
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.000
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.000
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.000
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.000
RBM39 Canis familiaris ENSCAFG00000008327 N 0.000
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.000
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.000
rbm39a Danio rerio ENSDARG00000011613 N 0.000
rbm39b Danio rerio ENSDARG00000041853 N 0.000
RBM39 Dasypus novemcinctus ENSDNOG00000025219 N 0.000
RBM39 Equus caballus ENSECAG00000013423 N 0.000
RBM39 Echinops telfairi ENSETEG00000016295 N 0.000
RBM39 Homo sapiens ENSG00000131051 N 0.000
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.000
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.000
RBM39 Gallus gallus ENSGALG00000001550 N 0.000
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.000
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.000
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.000
RBM39 Microcebus murinus ENSMICG00000001668 N 0.000
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.000
Rbm39 Mus musculus ENSMUSG00000027620 N 0.000
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.000
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.000
RBM23 Oryzias latipes ENSORLG00000009919 N 0.000
RBM23 Oryzias latipes ENSORLG00000010370 N 0.000
RBM39 Procavia capensis ENSPCAG00000008764 N 0.000
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.000
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.000
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.000
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.000
RBM39 Sorex araneus ENSSARG00000007673 N 0.000
RBM39 Sus scrofa ENSSSCG00000007309 N 0.000
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.000
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.000
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.000
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.000
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.000
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.000
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.000
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.000
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.000
PHUM394230 Pediculus humanus PHUM394230 N 0.000