CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TNRC6A
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000004325
T39627_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000003739
RRM
1673
1737
LVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
116 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.366_g
Serpula lacrymans
Genemark.366_g
N
0.000
PGTG_03172
Puccinia graminis
PGTG_03172
N
0.000
PGTG_03348
Puccinia graminis
PGTG_03348
N
0.000
PGTG_05307
Puccinia graminis
PGTG_05307
N
0.000
PGTG_05406
Puccinia graminis
PGTG_05406
N
0.000
PGTG_05408
Puccinia graminis
PGTG_05408
N
0.000
PGTG_09834
Puccinia graminis
PGTG_09834
N
0.000
PGTG_12045
Puccinia graminis
PGTG_12045
N
0.000
PGTG_12646
Puccinia graminis
PGTG_12646
N
0.000
PGTG_14567
Puccinia graminis
PGTG_14567
N
0.000
PGTG_15116
Puccinia graminis
PGTG_15116
N
0.000
PGTG_16335
Puccinia graminis
PGTG_16335
N
0.000
PGTG_18613
Puccinia graminis
PGTG_18613
N
0.000
PGTG_20442
Puccinia graminis
PGTG_20442
N
0.000
PTTG_01306
Puccinia triticina
PTTG_01306
N
0.000