PABPC5 (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSARG00000014012 T41378_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6 		Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		0.932
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000012664 RRM 20 90
ENSSARP00000012664 RRM 108 176
ENSSARP00000012664 RRM 201 270
ENSSARP00000012664 RRM 304 372

Links

Other RRM family RBPs
Other Sorex araneus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R014090 Ailuropoda melanoleuca Ame_R014090 N 0.000
A7Z062_BOVIN Bos taurus ENSBTAG00000014826 N 0.000
ZC3H7A Canis familiaris ENSCAFG00000018876 N 0.000
ZC3H7A Choloepus hoffmanni ENSCHOG00000005905 N 0.000
ZC3H7A Callithrix jacchus ENSCJAG00000008403 N 0.000
ZC3H7A Cavia porcellus ENSCPOG00000004454 N 0.000
Zc3h7a Dipodomys ordii ENSDORG00000013662 N 0.000
ZC3H7A Equus caballus ENSECAG00000003869 N 0.000
ZC3H7A Homo sapiens ENSG00000122299 N 0.000
ZC3H7A Gorilla gorilla ENSGGOG00000009732 N 0.000
ZC3H7A Loxodonta africana ENSLAFG00000004255 N 0.000
ZC3H7A Myotis lucifugus ENSMLUG00000016057 N 0.000
ZC3H7A Macaca mulatta ENSMMUG00000011242 N 0.000
ZC3H7A Oryctolagus cuniculus ENSOCUG00000017012 N 0.000
ZC3H7A Otolemur garnettii ENSOGAG00000010411 N 0.000
ZC3H7A Ochotona princeps ENSOPRG00000004406 N 0.000
ZC3H7A Procavia capensis ENSPCAG00000000183 N 0.000
ENSPPYG00000007111 Pongo pygmaeus ENSPPYG00000007111 N 0.000
ZC3H7A Pan troglodytes ENSPTRG00000007776 N 0.000
ZC3H7A Pteropus vampyrus ENSPVAG00000015398 N 0.000
D3ZP12_RAT Rattus norvegicus ENSRNOG00000002420 N 0.000
ZC3H7A Tursiops truncatus ENSTTRG00000016887 N 0.000
ZC3H7A Vicugna pacos ENSVPAG00000006902 N 0.000