PABPC5 (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000001063 T42701_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6 		Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		0.964
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000000979 RRM 20 90
ENSVPAP00000000979 RRM 108 176
ENSVPAP00000000979 RRM 201 270
ENSVPAP00000000979 RRM 304 372

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC5 Pteropus vampyrus ENSPVAG00000006465 I 0.975
PABPC5 Equus caballus ENSECAG00000003452 I 0.975
PABPC5 Bos taurus ENSBTAG00000019942 I 0.968
Ame_R017927 Ailuropoda melanoleuca Ame_R017927 I 0.968
ENSPPYG00000020526 Pongo pygmaeus ENSPPYG00000020526 I 0.964
PABPC5 Gorilla gorilla ENSGGOG00000007622 I 0.964
PABP5_PANTR Pan troglodytes ENSPTRG00000022078 I 0.964
PABPC5 Tupaia belangeri ENSTBEG00000016482 I 0.964
PABPC5 Homo sapiens ENSG00000174740 D 0.964
PABP5_MACMU Macaca mulatta ENSMMUG00000011562 I 0.961
PABPC5 Oryctolagus cuniculus ENSOCUG00000010919 I 0.957
PABPC5 Otolemur garnettii ENSOGAG00000006882 I 0.957
Q95M35_CALJA Callithrix jacchus ENSCJAG00000003665 I 0.957
LOC100360473 Rattus norvegicus ENSRNOG00000003354 I 0.943
Pabpc5 Dipodomys ordii ENSDORG00000001035 I 0.943
Pabpc5 Mus musculus ENSMUSG00000034732 I 0.939
PABPC5 Sorex araneus ENSSARG00000014012 I 0.939
PABPC5 Cavia porcellus ENSCPOG00000002555 I 0.921
PABPC5 Microcebus murinus ENSMICG00000009733 I 0.832
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.700