Pabpc5 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000001035 T36409_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6 		Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		0.946
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000000972 RRM 20 90
ENSDORP00000000972 RRM 108 176
ENSDORP00000000972 RRM 201 270
ENSDORP00000000972 RRM 304 372

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC5 Tupaia belangeri ENSTBEG00000016482 I 0.964
PABPC5 Equus caballus ENSECAG00000003452 I 0.957
PABPC5 Pteropus vampyrus ENSPVAG00000006465 I 0.953
PABP5_MACMU Macaca mulatta ENSMMUG00000011562 I 0.950
Ame_R017927 Ailuropoda melanoleuca Ame_R017927 I 0.950
PABPC5 Bos taurus ENSBTAG00000019942 I 0.950
Q95M35_CALJA Callithrix jacchus ENSCJAG00000003665 I 0.946
ENSPPYG00000020526 Pongo pygmaeus ENSPPYG00000020526 I 0.946
PABP5_PANTR Pan troglodytes ENSPTRG00000022078 I 0.946
PABPC5 Homo sapiens ENSG00000174740 D 0.946
PABPC5 Gorilla gorilla ENSGGOG00000007622 I 0.946
PABPC5 Vicugna pacos ENSVPAG00000001063 I 0.943
PABPC5 Oryctolagus cuniculus ENSOCUG00000010919 I 0.943
PABPC5 Otolemur garnettii ENSOGAG00000006882 I 0.939
LOC100360473 Rattus norvegicus ENSRNOG00000003354 I 0.935
Pabpc5 Mus musculus ENSMUSG00000034732 I 0.928
PABPC5 Sorex araneus ENSSARG00000014012 I 0.925
PABPC5 Cavia porcellus ENSCPOG00000002555 I 0.921
PABPC5 Microcebus murinus ENSMICG00000009733 I 0.824