PABPC5 (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000019942 T34910_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6 		Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		0.964
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000026566 RRM 18 88
ENSBTAP00000026566 RRM 106 174
ENSBTAP00000026566 RRM 199 268
ENSBTAP00000026566 RRM 302 370

Links

Other RRM family RBPs
Other Bos taurus RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC5 Equus caballus ENSECAG00000003452 I 0.971
PABPC5 Tupaia belangeri ENSTBEG00000016482 I 0.968
PABPC5 Vicugna pacos ENSVPAG00000001063 I 0.968
PABP5_PANTR Pan troglodytes ENSPTRG00000022078 I 0.964
Ame_R017927 Ailuropoda melanoleuca Ame_R017927 I 0.964
PABPC5 Pteropus vampyrus ENSPVAG00000006465 I 0.964
PABPC5 Gorilla gorilla ENSGGOG00000007622 I 0.964
PABPC5 Homo sapiens ENSG00000174740 D 0.964
ENSPPYG00000020526 Pongo pygmaeus ENSPPYG00000020526 I 0.964
PABPC5 Oryctolagus cuniculus ENSOCUG00000010919 I 0.961
PABP5_MACMU Macaca mulatta ENSMMUG00000011562 I 0.961
Q95M35_CALJA Callithrix jacchus ENSCJAG00000003665 I 0.957
PABPC5 Otolemur garnettii ENSOGAG00000006882 I 0.953
Pabpc5 Dipodomys ordii ENSDORG00000001035 I 0.950
PABPC5 Sorex araneus ENSSARG00000014012 I 0.946
LOC100360473 Rattus norvegicus ENSRNOG00000003354 I 0.939
Pabpc5 Mus musculus ENSMUSG00000034732 I 0.939
PABPC5 Cavia porcellus ENSCPOG00000002555 I 0.928
PABPC5 Microcebus murinus ENSMICG00000009733 I 0.839
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.700