PABPC5 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000174740 T37319_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6		 Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M162_0.6 RRM 20 90
M162_0.6 RRM 108 176
M162_0.6 RRM 201 270
M162_0.6 RRM 304 372

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000308012 RRM 20 90
ENSP00000308012 RRM 108 176
ENSP00000308012 RRM 201 270
ENSP00000308012 RRM 304 372
ENSP00000362197 RRM 37 106
ENSP00000362197 RRM 140 208
ENSP00000385644 RRM 20 90
ENSP00000385644 RRM 108 176
ENSP00000385644 RRM 201 270
ENSP00000385644 RRM 304 372

Links

Other RRM family RBPs
Other Homo sapiens RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000020526 Pongo pygmaeus ENSPPYG00000020526 I 1.000
PABPC5 Gorilla gorilla ENSGGOG00000007622 I 1.000
PABP5_PANTR Pan troglodytes ENSPTRG00000022078 I 1.000
PABP5_MACMU Macaca mulatta ENSMMUG00000011562 I 0.996
Q95M35_CALJA Callithrix jacchus ENSCJAG00000003665 I 0.993
PABPC5 Tupaia belangeri ENSTBEG00000016482 I 0.975
PABPC5 Oryctolagus cuniculus ENSOCUG00000010919 I 0.971
PABPC5 Equus caballus ENSECAG00000003452 I 0.971
PABPC5 Vicugna pacos ENSVPAG00000001063 I 0.964
Ame_R017927 Ailuropoda melanoleuca Ame_R017927 I 0.964
PABPC5 Bos taurus ENSBTAG00000019942 I 0.964
PABPC5 Pteropus vampyrus ENSPVAG00000006465 I 0.964
PABPC5 Otolemur garnettii ENSOGAG00000006882 I 0.964
Pabpc5 Mus musculus ENSMUSG00000034732 I 0.961
LOC100360473 Rattus norvegicus ENSRNOG00000003354 I 0.961
Pabpc5 Dipodomys ordii ENSDORG00000001035 I 0.946
PABPC5 Cavia porcellus ENSCPOG00000002555 I 0.932
PABPC5 Sorex araneus ENSSARG00000014012 I 0.932
PABPC5 Microcebus murinus ENSMICG00000009733 I 0.839