SRSF3 (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000005481 T42745_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp1
M336_0.6 		Drosophila melanogaster Sequence logo not available AUCYNNA SELEX
Cook et al.(2011)
804_7664738.1 		0.712
Rbp1
M335_0.6 		Drosophila melanogaster Sequence logo not available DCADCUUUA SELEX
Cook et al.(2011)
804_7664738 		0.712
Rbp1-like
M121_0.6 		Drosophila melanogaster AUCADCR RNAcompete
Ray et al.(2013)
RNCMPT00127 		0.712
Rbp1
M056_0.6 		Drosophila melanogaster WCAACRR RNAcompete
Ray et al.(2013)
RNCMPT00058 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000005093 RRM 12 77

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.000
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.000
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.000
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.000
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.000
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.000
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.000
RBM47 Danio rerio ENSDARG00000061985 I 0.000
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.000
LOC100063743 Equus caballus ENSECAG00000004400 I 0.000
RBM47 Echinops telfairi ENSETEG00000009194 I 0.000
RBM47 Felis catus ENSFCAG00000012399 I 0.000
RBM47 Homo sapiens ENSG00000163694 I 0.000
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.000
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.000
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.000
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.000
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.000
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.000
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.000
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.000
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.000
Rbm47 Mus musculus ENSMUSG00000070780 I 0.000
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.000
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.000
RBM47 Oryzias latipes ENSORLG00000005847 I 0.000
RBM47 Procavia capensis ENSPCAG00000011879 I 0.000
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.000
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.000
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.000
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.000
RBM47 Sorex araneus ENSSARG00000001735 I 0.000
RBM47 Sus scrofa ENSSSCG00000008796 I 0.000
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.000
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.000
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.000
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.000
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.000
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.000
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.000