XM_001362366.1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000020561 T39212_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.877
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.852
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000025722 RRM 72 141
ENSMODP00000025722 RRM 152 218
ENSMODP00000025722 RRM 247 309

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.910
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.901
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.901
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.887
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.877
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.877
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.877
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.877
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.872
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.872
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.872
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.872
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.872
RBM47 Homo sapiens ENSG00000163694 I 0.872
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.872
RBM47 Echinops telfairi ENSETEG00000009194 I 0.872
RBM47 Procavia capensis ENSPCAG00000011879 I 0.872
Rbm47 Mus musculus ENSMUSG00000070780 I 0.872
RBM47 Sorex araneus ENSSARG00000001735 I 0.872
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.872
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.872
RBM47 Sus scrofa ENSSSCG00000008796 I 0.867
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.867
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.867
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.867
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.867
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.867
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.867
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.867
RBM47 Felis catus ENSFCAG00000012399 I 0.867
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.853
LOC100063743 Equus caballus ENSECAG00000004400 I 0.852
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.852
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.852
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.852
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.852
RBM47 Oryzias latipes ENSORLG00000005847 I 0.847
RBM47 Danio rerio ENSDARG00000061985 I 0.847
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.793
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.783
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.744
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.723
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.718
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.718
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.713
RBM46 Equus caballus ENSECAG00000007649 I 0.709
Rbm46 Mus musculus ENSMUSG00000033882 I 0.709
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.709
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.709
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.706
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.704
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.704
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.704
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.704
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.704
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.704
RBM46 Bos taurus ENSBTAG00000001696 I 0.704
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.704
RBM46 Sorex araneus ENSSARG00000006520 I 0.704
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.704
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.704
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.704
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.704
RBM46 Sus scrofa ENSSSCG00000008994 I 0.704
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.704
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.704
RBM46 Echinops telfairi ENSETEG00000014902 I 0.704
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.704
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.704
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.704
RBM46 Canis familiaris ENSCAFG00000008473 I 0.704
RBM46 Homo sapiens ENSG00000151962 D 0.704