RBM47 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000004727 T41587_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.881
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.832
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000004238 RRM 73 127
ENSSTOP00000004238 RRM 146 212
ENSSTOP00000004238 RRM 240 304

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.911
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.911
RBM47 Echinops telfairi ENSETEG00000009194 I 0.911
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.906
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.906
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.906
RBM47 Procavia capensis ENSPCAG00000011879 I 0.906
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.906
RBM47 Homo sapiens ENSG00000163694 I 0.906
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.901
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.901
RBM47 Sus scrofa ENSSSCG00000008796 I 0.901
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.901
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.896
Rbm47 Mus musculus ENSMUSG00000070780 I 0.896
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.896
RBM47 Felis catus ENSFCAG00000012399 I 0.896
RBM47 Sorex araneus ENSSARG00000001735 I 0.896
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.891
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.891
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.891
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.887
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.881
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.881
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.881
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.881
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.881
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.881
LOC100063743 Equus caballus ENSECAG00000004400 I 0.881
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.876
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.861
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.832
RBM47 Oryzias latipes ENSORLG00000005847 I 0.812
RBM47 Danio rerio ENSDARG00000061985 I 0.812
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.807
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.807
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.802
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.793
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.792
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.776
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.749
ENSCJAG00000034583 Callithrix jacchus ENSCJAG00000034583 I 0.706