Rbm47 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000002408 T41018_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.941
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.896
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000003327 RRM 73 141
ENSRNOP00000003327 RRM 153 220
ENSRNOP00000003327 RRM 248 312

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Rbm47 Mus musculus ENSMUSG00000070780 I 0.995
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.980
RBM47 Echinops telfairi ENSETEG00000009194 I 0.980
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.980
RBM47 Homo sapiens ENSG00000163694 I 0.975
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.975
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.975
RBM47 Procavia capensis ENSPCAG00000011879 I 0.975
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.975
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.975
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.970
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.970
RBM47 Sus scrofa ENSSSCG00000008796 I 0.970
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.970
RBM47 Felis catus ENSFCAG00000012399 I 0.965
RBM47 Sorex araneus ENSSARG00000001735 I 0.965
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.965
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.965
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.960
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.960
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.960
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.960
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.956
LOC100063743 Equus caballus ENSECAG00000004400 I 0.950
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.946
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.941
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.941
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.941
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.936
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.931
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.896
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.891
RBM47 Oryzias latipes ENSORLG00000005847 I 0.886
RBM47 Danio rerio ENSDARG00000061985 I 0.881
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.876
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.876
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.876
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.871
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.867
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.827
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.823
ENSCJAG00000034583 Callithrix jacchus ENSCJAG00000034583 I 0.744
RBM46 Equus caballus ENSECAG00000007649 I 0.739
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.738
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.738
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.738
Rbm46 Mus musculus ENSMUSG00000033882 I 0.738
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.738
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.738
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.738
RBM46 Canis familiaris ENSCAFG00000008473 I 0.738
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.738
RBM46 Bos taurus ENSBTAG00000001696 I 0.738
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.738
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.738
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.738
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.738
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.738
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.738
RBM46 Echinops telfairi ENSETEG00000014902 I 0.738
RBM46 Homo sapiens ENSG00000151962 D 0.738
RBM46 Sorex araneus ENSSARG00000006520 I 0.738
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.738
RBM46 Sus scrofa ENSSSCG00000008994 I 0.738
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.734
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.733
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.733
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.733
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.733
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.730
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.729
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.729
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.728
RBM46 Felis catus ENSFCAG00000009246 I 0.728
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.728
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.723
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.723
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.718
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.712
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.709
ENSCPOG00000019272 Cavia porcellus ENSCPOG00000019272 I 0.708
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.708
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.704
Rbm46 Dipodomys ordii ENSDORG00000006405 I 0.703