ENSPPYG00000014688 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000014688 T40550_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.946
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.901
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000016405 RRM 73 141
ENSPPYP00000016405 RRM 153 220
ENSPPYP00000016405 RRM 248 313
ENSPPYP00000016406 RRM 58 127
ENSPPYP00000016406 RRM 147 203
ENSPPYP00000016406 RRM 229 292
ENSPPYP00000016407 RRM 32 85
ENSPPYP00000016407 RRM 105 161
ENSPPYP00000016407 RRM 187 250
ENSPPYP00000016408 RRM 58 127
ENSPPYP00000016408 RRM 147 203
ENSPPYP00000016408 RRM 229 292

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM47 Homo sapiens ENSG00000163694 I 0.980
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.980
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.980
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.980
RBM47 Procavia capensis ENSPCAG00000011879 I 0.980
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.980
RBM47 Felis catus ENSFCAG00000012399 I 0.975
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.975
RBM47 Echinops telfairi ENSETEG00000009194 I 0.975
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.975
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.975
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.975
RBM47 Sorex araneus ENSSARG00000001735 I 0.975
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.975
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.975
RBM47 Sus scrofa ENSSSCG00000008796 I 0.970
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.970
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.970
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.970
Rbm47 Mus musculus ENSMUSG00000070780 I 0.961
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.956
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.956
LOC100063743 Equus caballus ENSECAG00000004400 I 0.951
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.951
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.951
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.946
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.946
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.946
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.931
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.926
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.901
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.887
RBM47 Danio rerio ENSDARG00000061985 I 0.872
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.872
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.872
RBM47 Oryzias latipes ENSORLG00000005847 I 0.872
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.862
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.862
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.853
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.828
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.809
ENSCJAG00000034583 Callithrix jacchus ENSCJAG00000034583 I 0.736
RBM46 Equus caballus ENSECAG00000007649 I 0.735
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.734
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.734
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.734
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.734
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.734
RBM46 Sus scrofa ENSSSCG00000008994 I 0.734
Rbm46 Mus musculus ENSMUSG00000033882 I 0.734
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.734
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.734
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.734
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.734
RBM46 Sorex araneus ENSSARG00000006520 I 0.734
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.734
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.734
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.734
RBM46 Homo sapiens ENSG00000151962 D 0.734
RBM46 Canis familiaris ENSCAFG00000008473 I 0.734
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.734
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.734
RBM46 Echinops telfairi ENSETEG00000014902 I 0.734
RBM46 Bos taurus ENSBTAG00000001696 I 0.734
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.730
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.729
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.729
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.729
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.729
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.725
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.725
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.724
RBM46 Felis catus ENSFCAG00000009246 I 0.724
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.724
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.722
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.719
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.719
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.714
ENSCPOG00000019272 Cavia porcellus ENSCPOG00000019272 I 0.709
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.709
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.706
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.704
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.700