RBM47 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000016223 T37538_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.886
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.881
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.711
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000021405 RRM 88 156
ENSGACP00000021405 RRM 168 235
ENSGACP00000021405 RRM 263 327
ENSGACP00000021406 RRM 88 156
ENSGACP00000021406 RRM 168 235
ENSGACP00000021406 RRM 263 327

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.960
RBM47 Oryzias latipes ENSORLG00000005847 I 0.960
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.955
RBM47 Danio rerio ENSDARG00000061985 I 0.916
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.906
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.906
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.896
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.886
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.886
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.886
RBM47 Procavia capensis ENSPCAG00000011879 I 0.881
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.881
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.881
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.881
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.881
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.881
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.881
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.881
RBM47 Homo sapiens ENSG00000163694 I 0.881
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.881
RBM47 Echinops telfairi ENSETEG00000009194 I 0.881
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.876
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.876
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.876
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.876
RBM47 Sorex araneus ENSSARG00000001735 I 0.876
Rbm47 Mus musculus ENSMUSG00000070780 I 0.876
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.876
RBM47 Sus scrofa ENSSSCG00000008796 I 0.871
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.871
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.871
RBM47 Felis catus ENSFCAG00000012399 I 0.871
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.871
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.862
LOC100063743 Equus caballus ENSECAG00000004400 I 0.861
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.861
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.852
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.812
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.802
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.798
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.762
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.733
Rbm46 Mus musculus ENSMUSG00000033882 I 0.733
RBM46 Equus caballus ENSECAG00000007649 I 0.729
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.728
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.728
RBM46 Canis familiaris ENSCAFG00000008473 I 0.728
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.728
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.728
RBM46 Bos taurus ENSBTAG00000001696 I 0.728
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.728
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.728
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.728
RBM46 Homo sapiens ENSG00000151962 D 0.728
RBM46 Echinops telfairi ENSETEG00000014902 I 0.728
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.728
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.728
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.728
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.728
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.728
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.728
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.728
RBM46 Sorex araneus ENSSARG00000006520 I 0.728
RBM46 Sus scrofa ENSSSCG00000008994 I 0.728
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.728
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.728
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.724
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.723
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.723
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.718
RBM46 Felis catus ENSFCAG00000009246 I 0.718
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.718
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.714
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.714
A1CF Sus scrofa ENSSSCG00000010431 I 0.714
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.713
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.713
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.709
A1CF Cavia porcellus ENSCPOG00000009807 I 0.709
A1cf Mus musculus ENSMUSG00000052595 I 0.709
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.709
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.709
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.709
A1CF Loxodonta africana ENSLAFG00000015462 I 0.709
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.709
A1CF Macaca mulatta ENSMMUG00000007077 I 0.709
A1CF Bos taurus ENSBTAG00000021195 I 0.709
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.709
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.707
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.706
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.704
a1cf Danio rerio ENSDARG00000002968 I 0.704
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.704
A1CF Equus caballus ENSECAG00000010424 I 0.704
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.704
A1CF Anolis carolinensis ENSACAG00000015269 I 0.704
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.702