sltm (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000010840 T42868_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000023704 RRM 378 448
ENSXETP00000023707 RRM 358 428
ENSXETP00000055157 RRM 212 282

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI00172 Xenopus laevis AAI00172 N 1.000
amel4_ncbi_hmm13354 Apis mellifera amel4_ncbi_hmm13354 N 0.746
Ame_R015170 Ailuropoda melanoleuca Ame_R015170 N 0.915
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.761
Ame_R016389 Ailuropoda melanoleuca Ame_R016389 N 0.718
SLTM Anolis carolinensis ENSACAG00000015120 N 0.930
ENSACAG00000016893 Anolis carolinensis ENSACAG00000016893 N 0.775
SAFB2 Bos taurus ENSBTAG00000001790 N 0.775
ENSBTAG00000007875 Bos taurus ENSBTAG00000007875 N 0.718
SLTM Bos taurus ENSBTAG00000011319 N 0.915
LOC787645 Bos taurus ENSBTAG00000035584 N 0.732
A7E314_BOVIN Bos taurus ENSBTAG00000035585 N 0.718
SLTM Canis familiaris ENSCAFG00000016586 N 0.915
SAFB Canis familiaris ENSCAFG00000018803 N 0.718
SAFB2 Canis familiaris ENSCAFG00000018814 N 0.775
SLTM Choloepus hoffmanni ENSCHOG00000001125 N 0.887
SAFB Callithrix jacchus ENSCJAG00000017081 N 0.718
SAFB2 Callithrix jacchus ENSCJAG00000017205 N 0.775
SLTM Callithrix jacchus ENSCJAG00000020395 N 0.901
SAFB2 Cavia porcellus ENSCPOG00000011394 N 0.746
SLTM Cavia porcellus ENSCPOG00000026109 N 0.901
SAFB Cavia porcellus ENSCPOG00000026322 N 0.732
ENSDARG00000017150 Danio rerio ENSDARG00000017150 N 0.944
safb Danio rerio ENSDARG00000020467 N 0.761
SLTM Dasypus novemcinctus ENSDNOG00000002975 N 0.915
SAFB Dasypus novemcinctus ENSDNOG00000015746 N 0.718
Sltm Dipodomys ordii ENSDORG00000007463 N 0.930
Safb2 Dipodomys ordii ENSDORG00000016199 N 0.761
Safb Dipodomys ordii ENSDORG00000016200 N 0.718
LOC100068259 Equus caballus ENSECAG00000011267 N 0.915
LOC100064953 Equus caballus ENSECAG00000018659 N 0.732
LOC100064922 Equus caballus ENSECAG00000018978 N 0.775
SLTM Erinaceus europaeus ENSEEUG00000000580 N 0.845
SLTM Echinops telfairi ENSETEG00000008003 N 0.915
SAFB2 Echinops telfairi ENSETEG00000016756 N 0.761
SAFB Echinops telfairi ENSETEG00000018679 N 0.732
SLTM Felis catus ENSFCAG00000004826 N 0.901
SAFB2 Felis catus ENSFCAG00000011834 N 0.775
SAFB Felis catus ENSFCAG00000011835 N 0.718
SAFB2 Homo sapiens ENSG00000130254 N 0.775
SLTM Homo sapiens ENSG00000137776 N 0.915
SAFB Homo sapiens ENSG00000160633 N 0.718
SAFB Gasterosteus aculeatus ENSGACG00000011385 N 0.746
SLTM Gasterosteus aculeatus ENSGACG00000015814 N 0.845
SAFB2 Gallus gallus ENSGALG00000001948 N 0.761
SLTM Gallus gallus ENSGALG00000004192 N 0.944
SAFB2 Gallus gallus ENSGALG00000013365 N 0.704
SAFB2 Gorilla gorilla ENSGGOG00000015093 N 0.775
SAFB Gorilla gorilla ENSGGOG00000015109 N 0.718
SAFB2 Loxodonta africana ENSLAFG00000003836 N 0.775
SAFB Loxodonta africana ENSLAFG00000003840 N 0.718
SLTM Loxodonta africana ENSLAFG00000017922 N 0.901
SAFB2 Macropus eugenii ENSMEUG00000002456 N 0.746
ENSMGAG00000001051 Meleagris gallopavo ENSMGAG00000001051 N 0.761
ENSMGAG00000001101 Meleagris gallopavo ENSMGAG00000001101 N 0.704
SLTM Meleagris gallopavo ENSMGAG00000005313 N 0.944
SAFB Microcebus murinus ENSMICG00000008739 N 0.718
SLTM Microcebus murinus ENSMICG00000013069 N 0.901
SAFB2 Myotis lucifugus ENSMLUG00000001050 N 0.761
SAFB Myotis lucifugus ENSMLUG00000001081 N 0.718
SAFB2 Macaca mulatta ENSMMUG00000017968 N 0.775
SAFB Macaca mulatta ENSMMUG00000017970 N 0.718
SLTM Macaca mulatta ENSMMUG00000022200 N 0.915
SAFB2 Monodelphis domestica ENSMODG00000001178 N 0.761
ENSMODG00000001236 Monodelphis domestica ENSMODG00000001236 N 0.732
XM_001377567.1 Monodelphis domestica ENSMODG00000008794 N 0.958
Sltm Mus musculus ENSMUSG00000032212 N 0.901
Safb2 Mus musculus ENSMUSG00000042625 N 0.761
Safb Mus musculus ENSMUSG00000071054 N 0.718
SLTM Ornithorhynchus anatinus ENSOANG00000012311 N 0.958
ENSOANG00000013644 Ornithorhynchus anatinus ENSOANG00000013644 N 0.761
SAFB2 Oryctolagus cuniculus ENSOCUG00000001592 N 0.746
SLTM Oryctolagus cuniculus ENSOCUG00000003327 N 0.915
SAFB Oryctolagus cuniculus ENSOCUG00000014628 N 0.718
SAFB2 Otolemur garnettii ENSOGAG00000006855 N 0.775
SLTM Otolemur garnettii ENSOGAG00000011297 N 0.915
SAFB Ochotona princeps ENSOPRG00000011561 N 0.704
SLTM Oryzias latipes ENSORLG00000008161 N 0.859
SAFB Oryzias latipes ENSORLG00000016989 N 0.732
SAFB2 Procavia capensis ENSPCAG00000006352 N 0.761
ENSPPYG00000006515 Pongo pygmaeus ENSPPYG00000006515 N 0.915
ENSPPYG00000009427 Pongo pygmaeus ENSPPYG00000009427 N 0.775
ENSPPYG00000009428 Pongo pygmaeus ENSPPYG00000009428 N 0.718
SLTM Pan troglodytes ENSPTRG00000007121 N 0.915
SAFB2 Pan troglodytes ENSPTRG00000010334 N 0.775
SAFB Pan troglodytes ENSPTRG00000010335 N 0.704
SAFB Pteropus vampyrus ENSPVAG00000004913 N 0.718
SLTM Pteropus vampyrus ENSPVAG00000015056 N 0.915
Sltm Rattus norvegicus ENSRNOG00000013708 N 0.915
SAFB2 Sorex araneus ENSSARG00000000649 N 0.775
SAFB Sorex araneus ENSSARG00000010475 N 0.718
ENSSSCG00000004591 Sus scrofa ENSSSCG00000004591 N 0.901
ENSSSCG00000004592 Sus scrofa ENSSSCG00000004592 N 0.901
ENSSSCG00000013523 Sus scrofa ENSSSCG00000013523 N 0.775
SAFB2 Spermophilus tridecemlineatus ENSSTOG00000002758 N 0.775
SLTM Tupaia belangeri ENSTBEG00000000945 N 0.915
SAFB-1 Taeniopygia guttata ENSTGUG00000000489 N 0.761
SAFB-2 Taeniopygia guttata ENSTGUG00000000502 N 0.704
SLTM Taeniopygia guttata ENSTGUG00000006017 N 0.944
SLTM Tetraodon nigroviridis ENSTNIG00000009334 N 0.859
ENSTNIG00000015470 Tetraodon nigroviridis ENSTNIG00000015470 N 0.732
SAFB Takifugu rubripes ENSTRUG00000003567 N 0.746
SLTM Takifugu rubripes ENSTRUG00000017767 N 0.873
SAFB Tarsius syrichta ENSTSYG00000001851 N 0.718
SLTM Tursiops truncatus ENSTTRG00000005246 N 0.915
SAFB2 Tursiops truncatus ENSTTRG00000013585 N 0.775
SAFB Tursiops truncatus ENSTTRG00000013588 N 0.718
SLTM Vicugna pacos ENSVPAG00000008606 N 0.915
SAFB Vicugna pacos ENSVPAG00000012043 N 0.718
estExt_fgenesh2_pg.C_3630023 Branchiostoma floridae estExt_fgenesh2_pg.C_3630023 N 0.775
estExt_fgenesh2_pg.C_4200008 Branchiostoma floridae estExt_fgenesh2_pg.C_4200008 N 0.775
CG6995 Drosophila melanogaster FBgn0039229 N 0.704
GG11323 Drosophila erecta FBgn0103624 N 0.704
GL13631 Drosophila persimilis FBgn0151236 N 0.704
GM26630 Drosophila sechellia FBgn0181483 N 0.704
GD21133 Drosophila simulans FBgn0192585 N 0.704
GE23518 Drosophila yakuba FBgn0240697 N 0.704
GA26852-RA Drosophila pseudoobscura FBgn0248225 N 0.704
Q498L2 Xenopus laevis Q498L2 N 1.000