SAFB (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000026322 T35923_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000017908 RRM 409 478

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100064953 Equus caballus ENSECAG00000018659 N 0.971
SAFB Echinops telfairi ENSETEG00000018679 N 0.971
SAFB2 Cavia porcellus ENSCPOG00000011394 N 0.958
SAFB Tarsius syrichta ENSTSYG00000001851 N 0.957
SAFB Myotis lucifugus ENSMLUG00000001081 N 0.957
SAFB Tursiops truncatus ENSTTRG00000013588 N 0.957
SAFB Felis catus ENSFCAG00000011835 N 0.957
SAFB Homo sapiens ENSG00000160633 N 0.957
SAFB Sorex araneus ENSSARG00000010475 N 0.957
SAFB Pteropus vampyrus ENSPVAG00000004913 N 0.957
ENSPPYG00000009428 Pongo pygmaeus ENSPPYG00000009428 N 0.957
Safb Mus musculus ENSMUSG00000071054 N 0.957
SAFB Microcebus murinus ENSMICG00000008739 N 0.957
SAFB Vicugna pacos ENSVPAG00000012043 N 0.957
SAFB Canis familiaris ENSCAFG00000018803 N 0.957
SAFB Callithrix jacchus ENSCJAG00000017081 N 0.957
SAFB Dasypus novemcinctus ENSDNOG00000015746 N 0.957
SAFB Oryctolagus cuniculus ENSOCUG00000014628 N 0.957
SAFB Gorilla gorilla ENSGGOG00000015109 N 0.957
Safb Dipodomys ordii ENSDORG00000016200 N 0.957
Ame_R016389 Ailuropoda melanoleuca Ame_R016389 N 0.957
A7E314_BOVIN Bos taurus ENSBTAG00000035585 N 0.957
SAFB Macaca mulatta ENSMMUG00000017970 N 0.957
ENSBTAG00000007875 Bos taurus ENSBTAG00000007875 N 0.957
SAFB2 Sorex araneus ENSSARG00000000649 N 0.944
SAFB Gasterosteus aculeatus ENSGACG00000011385 N 0.944
SAFB Takifugu rubripes ENSTRUG00000003567 N 0.944
SAFB Pan troglodytes ENSPTRG00000010335 N 0.943
SAFB Loxodonta africana ENSLAFG00000003840 N 0.943
SAFB Ochotona princeps ENSOPRG00000011561 N 0.943
SAFB2 Otolemur garnettii ENSOGAG00000006855 N 0.930
SAFB2 Bos taurus ENSBTAG00000001790 N 0.930
SAFB2 Callithrix jacchus ENSCJAG00000017205 N 0.930
ENSOANG00000013644 Ornithorhynchus anatinus ENSOANG00000013644 N 0.930
SAFB2 Oryctolagus cuniculus ENSOCUG00000001592 N 0.930
SAFB2 Tursiops truncatus ENSTTRG00000013585 N 0.930
SAFB2 Procavia capensis ENSPCAG00000006352 N 0.930
SAFB2 Spermophilus tridecemlineatus ENSSTOG00000002758 N 0.930
SAFB-1 Taeniopygia guttata ENSTGUG00000000489 N 0.930
ENSTNIG00000015470 Tetraodon nigroviridis ENSTNIG00000015470 N 0.930
ENSPPYG00000009427 Pongo pygmaeus ENSPPYG00000009427 N 0.930
ENSSSCG00000013523 Sus scrofa ENSSSCG00000013523 N 0.930
SAFB2 Pan troglodytes ENSPTRG00000010334 N 0.930
SAFB2 Gorilla gorilla ENSGGOG00000015093 N 0.930
SAFB2 Homo sapiens ENSG00000130254 N 0.930
LOC100064922 Equus caballus ENSECAG00000018978 N 0.930
SAFB2 Loxodonta africana ENSLAFG00000003836 N 0.930
ENSMGAG00000001051 Meleagris gallopavo ENSMGAG00000001051 N 0.930
SAFB2 Gallus gallus ENSGALG00000001948 N 0.930
SAFB2 Macaca mulatta ENSMMUG00000017968 N 0.930
SAFB2 Gallus gallus ENSGALG00000013365 N 0.929
ENSMGAG00000001101 Meleagris gallopavo ENSMGAG00000001101 N 0.929
LOC787645 Bos taurus ENSBTAG00000035584 N 0.929
ENSMODG00000001236 Monodelphis domestica ENSMODG00000001236 N 0.929
SAFB-2 Taeniopygia guttata ENSTGUG00000000502 N 0.929
SAFB2 Canis familiaris ENSCAFG00000018814 N 0.915
safb Danio rerio ENSDARG00000020467 N 0.915
SAFB2 Myotis lucifugus ENSMLUG00000001050 N 0.915
SAFB2 Echinops telfairi ENSETEG00000016756 N 0.915
SAFB2 Monodelphis domestica ENSMODG00000001178 N 0.915
SAFB2 Felis catus ENSFCAG00000011834 N 0.915
SAFB2 Macropus eugenii ENSMEUG00000002456 N 0.914
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.901
ENSACAG00000016893 Anolis carolinensis ENSACAG00000016893 N 0.901
SAFB Oryzias latipes ENSORLG00000016989 N 0.901
ENSACAG00000016928 Anolis carolinensis ENSACAG00000016928 N 0.886
Safb2 Dipodomys ordii ENSDORG00000016199 N 0.873
estExt_fgenesh2_pg.C_4200008 Branchiostoma floridae estExt_fgenesh2_pg.C_4200008 N 0.873
estExt_fgenesh2_pg.C_3630023 Branchiostoma floridae estExt_fgenesh2_pg.C_3630023 N 0.873
Safb2 Mus musculus ENSMUSG00000042625 N 0.873
fgenesh1_pm.C_scaffold_151000005 Capitella teleta fgenesh1_pm.C_scaffold_151000005 N 0.845
estExt_fgenesh2_pg.C_sca_50258 Lottia gigantea estExt_fgenesh2_pg.C_sca_50258 N 0.831
amel4_ncbi_hmm13354 Apis mellifera amel4_ncbi_hmm13354 N 0.817
AAEL001352 Aedes aegypti AAEL001352 N 0.775
DGIL_AUG5s7140g4t1 Acyrtosiphon pisum DGIL_AUG5s7140g4t1 N 0.761
CpipJ_CPIJ012814 Culex pipiens CpipJ_CPIJ012814 N 0.761
CPIJ012814 Culex quinquefasciatus CPIJ012814 N 0.761
168846 Helobdella robusta 168846 N 0.761
DGIL_AUG5s8592g2t1 Acyrtosiphon pisum DGIL_AUG5s8592g2t1 N 0.746
nasonia_NCBI_hmm598374 Nasonia vitripennis nasonia_NCBI_hmm598374 N 0.746
SLTM Gallus gallus ENSGALG00000004192 N 0.746
SLTM Meleagris gallopavo ENSMGAG00000005313 N 0.746
AGAP001298 Anopheles gambiae AGAP001298 N 0.746
SLTM Taeniopygia guttata ENSTGUG00000006017 N 0.746
SLTM Echinops telfairi ENSETEG00000008003 N 0.746
LOC100068259 Equus caballus ENSECAG00000011267 N 0.732
AAI00172 Xenopus laevis AAI00172 N 0.732
SLTM Canis familiaris ENSCAFG00000016586 N 0.732
Q498L2 Xenopus laevis Q498L2 N 0.732
SLTM Bos taurus ENSBTAG00000011319 N 0.732
SLTM Callithrix jacchus ENSCJAG00000020395 N 0.732
Sltm Dipodomys ordii ENSDORG00000007463 N 0.732
SLTM Dasypus novemcinctus ENSDNOG00000002975 N 0.732
SLTM Vicugna pacos ENSVPAG00000008606 N 0.732
Ame_R015170 Ailuropoda melanoleuca Ame_R015170 N 0.732
SLTM Loxodonta africana ENSLAFG00000017922 N 0.732
SLTM Otolemur garnettii ENSOGAG00000011297 N 0.732
Sltm Rattus norvegicus ENSRNOG00000013708 N 0.732
SLTM Pteropus vampyrus ENSPVAG00000015056 N 0.732
SLTM Pan troglodytes ENSPTRG00000007121 N 0.732
ENSDARG00000017150 Danio rerio ENSDARG00000017150 N 0.732
SLTM Macaca mulatta ENSMMUG00000022200 N 0.732
SLTM Tupaia belangeri ENSTBEG00000000945 N 0.732
SLTM Ornithorhynchus anatinus ENSOANG00000012311 N 0.732
sltm Xenopus tropicalis ENSXETG00000010840 N 0.732
XM_001377567.1 Monodelphis domestica ENSMODG00000008794 N 0.732
ENSPPYG00000006515 Pongo pygmaeus ENSPPYG00000006515 N 0.732
SLTM Oryctolagus cuniculus ENSOCUG00000003327 N 0.732
SLTM Homo sapiens ENSG00000137776 N 0.732
SLTM Tursiops truncatus ENSTTRG00000005246 N 0.732
SLTM Cavia porcellus ENSCPOG00000026109 N 0.718
SLTM Microcebus murinus ENSMICG00000013069 N 0.718
SLTM Erinaceus europaeus ENSEEUG00000000580 N 0.718
Sltm Mus musculus ENSMUSG00000032212 N 0.718
PHUM451590 Pediculus humanus PHUM451590 N 0.718
SLTM Felis catus ENSFCAG00000004826 N 0.718
ENSSSCG00000004592 Sus scrofa ENSSSCG00000004592 N 0.718
ENSSSCG00000004591 Sus scrofa ENSSSCG00000004591 N 0.718
SLTM Anolis carolinensis ENSACAG00000015120 N 0.718
SLTM Choloepus hoffmanni ENSCHOG00000001125 N 0.714
estExt_fgenesh1_pg.C_1060073 Nematostella vectensis estExt_fgenesh1_pg.C_1060073 N 0.704