CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ21812
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0208930
T44103_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.974
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0236229
RRM
111
187
VFVVGLPPRLADADILKKHEYFGKYGKIHKVVINPSTTYAGVQGPSASAYVTYVHNPDALRAIQSVNNIMIDGRLIK
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.000
ADR062W
Ashbya gossypii
ADR062W
N
0.000
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.000
AFLA_103810
Aspergillus flavus
CADAFLAG00012116
N
0.000
AFUA_3G05570
Aspergillus fumigatus
CADAFUAG00005783
N
0.000
An11g11070
Aspergillus niger
CADANGAG00009424
N
0.000
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.000
AO090020000028
Aspergillus oryzae
CADAORAG00006562
N
0.000
ATEG_08978
Aspergillus terreus
CADATEAG00006440
N
0.000
NFIA_071620
Neosartorya fischeri
CADNFIAG00006536
N
0.000
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.000
CIMG_10872
Coccidioides immitis
CIMG_10872
N
0.000
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.000
CPSG_06815
Coccidioides posadasii
CPSG_06815
N
0.000
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.000
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.000
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.000
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.000
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.000
fgenesh1_pm.00118_#_26
Aspergillus carbonarius
fgenesh1_pm.00118_#_26
N
0.000
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.000
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.000
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.000
gw1.2.2109.1
Mucor circinelloides
gw1.2.2109.1
N
0.000
HCAG_10294
Histoplasma capsulatum
HCAG_10294
N
0.000
MCYG_08235
Microsporum canis
MCYG_08235
N
0.000
MGYG_05636
Microsporum gypseum
MGYG_05636
N
0.000
orf19.7385
Candida albicans
orf19.7385
N
0.000
PABG_05614
Paracoccidioides brasiliensis
PABG_05614
N
0.000
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.000
PMAA_005110
Penicillium marneffei
PMAA_005110
N
0.000
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.000
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.000
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.000
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.000
TEQG_01582
Trichophyton equinum
TEQG_01582
N
0.000
TERG_02518
Trichophyton rubrum
TERG_02518
N
0.000
UREG_06970
Uncinocarpus reesii
UREG_06970
N
0.000
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.000
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.000
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.000
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.000