ENSCING00000004364 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000004364 T35393_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.766
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000009024 RRM 114 190

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.766
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.766
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.766
CNOT4 Sorex araneus ENSSARG00000009778 I 0.766
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.766
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.766
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.766
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.766
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.766
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.766
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.766
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.766
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.766
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.766
AAH44088 Xenopus laevis AAH44088 I 0.766
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.766
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.766
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.766
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.766
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.766
zgc:63566 Danio rerio ENSDARG00000007639 I 0.766
CNOT4 Homo sapiens ENSG00000080802 D 0.766
CNOT4 Equus caballus ENSECAG00000020262 I 0.766
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.766
CNOT4 Danio rerio ENSDARG00000007045 I 0.766
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.766
Cnot4 Mus musculus ENSMUSG00000038784 I 0.766
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.766
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.766
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.766
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.766
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.766
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.753
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.753
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.753
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.740
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.740
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.727
XP_780160.2 Strongylocentrotus purpuratus XP_780160.2 I 0.722
XP_001179227.1 Strongylocentrotus purpuratus XP_001179227.1 I 0.722
AGAP009827 Anopheles gambiae AGAP009827 I 0.714
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.701
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 0.701
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.701
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 0.701
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.701
GJ21812 Drosophila virilis FBgn0208930 I 0.701
GH13370 Drosophila grimshawi FBgn0120846 I 0.701
GG10123 Drosophila erecta FBgn0102434 I 0.701
GF15780 Drosophila ananassae FBgn0092804 I 0.701
Cnot4 Drosophila melanogaster FBgn0051716 D 0.701
GI18285 Drosophila mojavensis FBgn0141024 I 0.701
GD23693 Drosophila simulans FBgn0195070 I 0.701
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 0.701
GE18937 Drosophila yakuba FBgn0236309 I 0.701
GK18552 Drosophila willistoni FBgn0220550 I 0.701
CpipJ_CPIJ019539 Culex pipiens CpipJ_CPIJ019539 I 0.701