B9I5U9_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0013s05120 T45638_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s05120.1 RRM 38 104
POPTR_0013s05120.1 RRM 392 466

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29950.m001170 Ricinus communis 29950.m001170 N 0.859
AT1G09230 Arabidopsis thaliana AT1G09230-TAIR-G N 0.732
BRADI2G18227 Brachypodium distachyon BRADI2G18227 N 0.739
cassava35697.valid.m1 Manihot esculenta cassava35697.valid.m1 N 0.831
XM_002892448.1 Arabidopsis lyrata fgenesh2_kg.1__966__AT1G09230.1 N 0.739
Glyma16g04710.1 Glycine max Glyma16g04710.1 N 0.789
GRMZM2G042615 Zea mays GRMZM2G042615 N 0.718
GSVIVG00020933001 Vitis vinifera GSVIVG00020933001 N 0.859
LOC_Os03g21020 Oryza sativa LOC_Os03g21020 N 0.718
Medtr7g100170 Medicago truncatula Medtr7g100170 N 0.725
PK28309.1 Cannabis sativa PK28309.1 N 0.734
POPTR_0019s04720 Populus trichocarpa POPTR_0019s04720 N 0.838
ppa005530m Prunus persica ppa005530m N 0.839
SB01G036600 Sorghum bicolor Sb01g036600 N 0.711