SB04G021130 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb04g021130 T45983_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb04g021130.1 RRM 271 336
Sb04g021130.1 RRM 356 421
Sb04g021130.1 RRM 826 898

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.810
29693.m002077 Ricinus communis 29693.m002077 N 0.815
30147.m014409 Ricinus communis 30147.m014409 N 0.790
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.780
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.785
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.717
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.878
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.790
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.795
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.741
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.888
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.722
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.785
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.746
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.746
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.702
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.702
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.824
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.824
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.824
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.824
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.824
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.824
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.810
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.795
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.815
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.810
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.815
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.805
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.820
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.815
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.805
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.727
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.824
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.805
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.820
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.824
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.805
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.956
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.800
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.717
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.839
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.829
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.834
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.717
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.878
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.790
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.810
mgf000415m Mimulus guttatus mgf000415m N 0.829
mgf005765m Mimulus guttatus mgf005765m N 0.820
mgf014747m Mimulus guttatus mgf014747m N 0.810
mgf015667m Mimulus guttatus mgf015667m N 0.829
mgf023970m Mimulus guttatus mgf023970m N 0.748
PK15886.1 Cannabis sativa PK15886.1 N 0.824
PK19379.1 Cannabis sativa PK19379.1 N 0.737
PK24656.1 Cannabis sativa PK24656.1 N 0.815
PK25465.1 Cannabis sativa PK25465.1 N 0.815
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.785
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.805
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.751
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.805
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.761
ppa000845m Prunus persica ppa000845m N 0.795
ppa000997m Prunus persica ppa000997m N 0.751
ppa001307m Prunus persica ppa001307m N 0.810
ppa001327m Prunus persica ppa001327m N 0.824
SB06G014670 Sorghum bicolor Sb06g014670 N 0.717
SB10G000350 Sorghum bicolor Sb10g000350 N 0.810