28350.m000106 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 28350.m000106 T48631_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
28350.m000106 RRM 158 223
28350.m000106 RRM 243 308
28350.m000106 RRM 654 725

Links

Other RRM family RBPs
Other Ricinus communis RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29693.m002077 Ricinus communis 29693.m002077 N 0.912
30147.m014409 Ricinus communis 30147.m014409 N 0.868
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.868
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.873
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.735
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.789
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.824
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.859
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.873
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.794
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.843
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.730
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.819
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.775
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.775
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.750
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.750
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.931
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.931
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.931
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.931
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.931
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.931
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.917
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.892
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.941
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.868
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.873
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.917
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.887
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.931
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.917
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.770
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.775
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.931
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.922
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.926
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.936
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.877
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.800
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.877
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.721
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.877
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.902
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.936
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.789
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.824
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.859
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.907
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.740
mgf000415m Mimulus guttatus mgf000415m N 0.853
mgf005765m Mimulus guttatus mgf005765m N 0.917
mgf014747m Mimulus guttatus mgf014747m N 0.937
mgf015667m Mimulus guttatus mgf015667m N 0.853
mgf023970m Mimulus guttatus mgf023970m N 0.853
PK15886.1 Cannabis sativa PK15886.1 N 0.858
PK19379.1 Cannabis sativa PK19379.1 N 0.779
PK24656.1 Cannabis sativa PK24656.1 N 0.926
PK25465.1 Cannabis sativa PK25465.1 N 0.941
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.829
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.941
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.809
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.941
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.814
ppa000845m Prunus persica ppa000845m N 0.843
ppa000997m Prunus persica ppa000997m N 0.824
ppa001307m Prunus persica ppa001307m N 0.931
ppa001327m Prunus persica ppa001327m N 0.951
SB04G021130 Sorghum bicolor Sb04g021130 N 0.810
SB06G014670 Sorghum bicolor Sb06g014670 N 0.701
SB10G000350 Sorghum bicolor Sb10g000350 N 0.877