29693.m002077 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29693.m002077 T48675_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29693.m002077 RRM 201 266
29693.m002077 RRM 286 351
29693.m002077 RRM 562 633

Links

Other RRM family RBPs
Other Ricinus communis RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.912
30147.m014409 Ricinus communis 30147.m014409 N 0.843
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.848
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.853
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.730
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.809
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.809
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.854
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.877
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.804
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.833
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.716
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.809
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.770
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.770
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.730
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.730
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.966
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.966
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.966
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.966
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.966
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.956
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.926
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.892
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.907
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.853
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.848
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.892
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.853
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.897
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.892
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.765
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.750
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.926
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.922
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.941
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.931
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.873
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.790
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.868
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.853
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.873
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.931
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.809
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.809
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.854
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.936
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.716
mgf000415m Mimulus guttatus mgf000415m N 0.824
mgf005765m Mimulus guttatus mgf005765m N 0.902
mgf014747m Mimulus guttatus mgf014747m N 0.893
mgf015667m Mimulus guttatus mgf015667m N 0.824
mgf023970m Mimulus guttatus mgf023970m N 0.858
PK15886.1 Cannabis sativa PK15886.1 N 0.824
PK19379.1 Cannabis sativa PK19379.1 N 0.770
PK24656.1 Cannabis sativa PK24656.1 N 0.941
PK25465.1 Cannabis sativa PK25465.1 N 0.902
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.810
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.907
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.794
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.897
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.794
ppa000845m Prunus persica ppa000845m N 0.824
ppa000997m Prunus persica ppa000997m N 0.814
ppa001307m Prunus persica ppa001307m N 0.941
ppa001327m Prunus persica ppa001327m N 0.926
SB04G021130 Sorghum bicolor Sb04g021130 N 0.815
SB10G000350 Sorghum bicolor Sb10g000350 N 0.877