CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw.517.22.1
(
Branchiostoma floridae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw.517.22.1
T50215_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.517.22.1
RRM
21
84
VFVGNLNTVKVSKAEVENVFSRYGRIRGFSIHKGYAFVQYTDEAEARAAVTGEDGREIAGQVLG
Links
Other
RRM
family RBPs
Other
Branchiostoma floridae
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.000
CJA03993
Caenorhabditis japonica
CJA03993
N
0.000
CJA12868
Caenorhabditis japonica
CJA12868
N
0.000
CJA13138
Caenorhabditis japonica
CJA13138
N
0.000
CJA18092
Caenorhabditis japonica
CJA18092
N
0.000
CJA21290
Caenorhabditis japonica
CJA21290
N
0.000
CJA28132
Caenorhabditis japonica
CJA28132
N
0.000
CJA29053
Caenorhabditis japonica
CJA29053
N
0.000
CRE03331
Caenorhabditis remanei
CRE03331
N
0.000
CRE06628
Caenorhabditis remanei
CRE06628
N
0.000
CRE29150
Caenorhabditis remanei
CRE29150
N
0.000