CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GSTUMT00003772001
(
Tuber melanosporum
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GSTUMT00003772001
T06221_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSTUMT00003772001
CCCH ZF
86
110
NHVPCKFFRQGTCQAGKACPFSHSM
GSTUMT00003772001
CCCH ZF
114
138
SDQAPCKYFSKGNCKFGVKCALAHI
Links
Other
CCCH ZF
family RBPs
Other
Tuber melanosporum
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MGYG_05636
Microsporum gypseum
MGYG_05636
N
0.824
PABG_05614
Paracoccidioides brasiliensis
PABG_05614
N
0.824
TERG_02518
Trichophyton rubrum
TERG_02518
N
0.824
MCYG_08235
Microsporum canis
MCYG_08235
N
0.824
TEQG_01582
Trichophyton equinum
TEQG_01582
N
0.824
AFUA_3G05570
Aspergillus fumigatus
CADAFUAG00005783
N
0.804
HCAG_10294
Histoplasma capsulatum
HCAG_10294
N
0.804
AFLA_103810
Aspergillus flavus
CADAFLAG00012116
N
0.804
PMAA_005110
Penicillium marneffei
PMAA_005110
N
0.804
UREG_06970
Uncinocarpus reesii
UREG_06970
N
0.804
CIMG_10872
Coccidioides immitis
CIMG_10872
N
0.804
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.804
An11g11070
Aspergillus niger
CADANGAG00009424
N
0.804
CPSG_06815
Coccidioides posadasii
CPSG_06815
N
0.804
fgenesh1_pm.00118_#_26
Aspergillus carbonarius
fgenesh1_pm.00118_#_26
N
0.804
AO090020000028
Aspergillus oryzae
CADAORAG00006562
N
0.804
NFIA_071620
Neosartorya fischeri
CADNFIAG00006536
N
0.804
ATEG_08978
Aspergillus terreus
CADATEAG00006440
N
0.804
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.800
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.800
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.800
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.800
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.800
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.800
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.784
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.784
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.769
ADR062W
Ashbya gossypii
ADR062W
N
0.765
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.725
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.720
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.720
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.720
orf19.7385
Candida albicans
orf19.7385
N
0.720
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.720
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.706
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.706
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.706
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.700
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.700
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.700
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.700
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.700
SPCC1739.01
Schizosaccharomyces pombe
SPCC1739.01
N
0.700
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.700