CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YALI0B12540g
(
Yarrowia lipolytica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
YALI0B12540g
T06669_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
YALI0B12540g
CCCH ZF
22
46
SHVPCKFFRQGACQAGDSCVFSHSV
YALI0B12540g
CCCH ZF
51
74
QQAPCKYFQKGTCKFGVKCALAHI
Links
Other
CCCH ZF
family RBPs
Other
Yarrowia lipolytica
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ADR062W
Ashbya gossypii
ADR062W
N
0.820
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.820
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.800
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.796
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.780
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.760
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.760
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.760
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.760
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.760
orf19.7385
Candida albicans
orf19.7385
N
0.755
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.755
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.755
ATEG_08978
Aspergillus terreus
CADATEAG00006440
N
0.745
AO090020000028
Aspergillus oryzae
CADAORAG00006562
N
0.745
NFIA_071620
Neosartorya fischeri
CADNFIAG00006536
N
0.745
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.745
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.745
fgenesh1_pm.00118_#_26
Aspergillus carbonarius
fgenesh1_pm.00118_#_26
N
0.745
PMAA_005110
Penicillium marneffei
PMAA_005110
N
0.745
An11g11070
Aspergillus niger
CADANGAG00009424
N
0.745
PABG_05614
Paracoccidioides brasiliensis
PABG_05614
N
0.745
CIMG_10872
Coccidioides immitis
CIMG_10872
N
0.745
UREG_06970
Uncinocarpus reesii
UREG_06970
N
0.745
HCAG_10294
Histoplasma capsulatum
HCAG_10294
N
0.745
AFUA_3G05570
Aspergillus fumigatus
CADAFUAG00005783
N
0.745
AFLA_103810
Aspergillus flavus
CADAFLAG00012116
N
0.745
CPSG_06815
Coccidioides posadasii
CPSG_06815
N
0.745
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.740
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.735
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.735
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.735
MCYG_08235
Microsporum canis
MCYG_08235
N
0.725
MGYG_05636
Microsporum gypseum
MGYG_05636
N
0.725
TERG_02518
Trichophyton rubrum
TERG_02518
N
0.725
TEQG_01582
Trichophyton equinum
TEQG_01582
N
0.725
EuGene12000543
Heterobasidion annosum
EuGene12000543
N
0.714
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.712
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.700
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.700
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.700
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.700