CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc20g08250
(
Penicillium chrysogenum
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Pc20g08250
T06455_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc20g08250.t1
CCCH ZF
42
67
TKHVPCKFFRQGACQAGPACPFLHST
Pc20g08250.t1
CCCH ZF
72
95
DYAPCKYFAKGNCKFGAKCALAHI
Links
Other
CCCH ZF
family RBPs
Other
Penicillium chrysogenum
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
An11g11070
Aspergillus niger
CADANGAG00009424
N
0.980
AFUA_3G05570
Aspergillus fumigatus
CADAFUAG00005783
N
0.980
AFLA_103810
Aspergillus flavus
CADAFLAG00012116
N
0.980
AO090020000028
Aspergillus oryzae
CADAORAG00006562
N
0.980
fgenesh1_pm.00118_#_26
Aspergillus carbonarius
fgenesh1_pm.00118_#_26
N
0.980
NFIA_071620
Neosartorya fischeri
CADNFIAG00006536
N
0.980
ATEG_08978
Aspergillus terreus
CADATEAG00006440
N
0.980
PABG_05614
Paracoccidioides brasiliensis
PABG_05614
N
0.960
PMAA_005110
Penicillium marneffei
PMAA_005110
N
0.960
CIMG_10872
Coccidioides immitis
CIMG_10872
N
0.960
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.960
CPSG_06815
Coccidioides posadasii
CPSG_06815
N
0.960
UREG_06970
Uncinocarpus reesii
UREG_06970
N
0.960
HCAG_10294
Histoplasma capsulatum
HCAG_10294
N
0.960
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.941
TEQG_01582
Trichophyton equinum
TEQG_01582
N
0.940
TERG_02518
Trichophyton rubrum
TERG_02518
N
0.940
MGYG_05636
Microsporum gypseum
MGYG_05636
N
0.940
MCYG_08235
Microsporum canis
MCYG_08235
N
0.940
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.820
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.820
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.820
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.820
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.820
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.804
ADR062W
Ashbya gossypii
ADR062W
N
0.765
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.765
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.745
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.706
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.706
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.706
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.706
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.706
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.706
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.706